DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cubn and PDGFD

DIOPT Version :10

Sequence 1:NP_727348.2 Gene:Cubn / 326235 FlyBaseID:FBgn0052702 Length:3750 Species:Drosophila melanogaster
Sequence 2:NP_079484.1 Gene:PDGFD / 80310 HGNCID:30620 Length:370 Species:Homo sapiens


Alignment Length:267 Identity:70/267 - (26%)
Similarity:106/267 - (39%) Gaps:82/267 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1800 SGKFTSPYYPASYPPNIECLWLLEASMGNSLSLTLES-MDLEKSES--CNRDYLEVREESESGQL 1861
            :|...||.:|.|||.|:...|.|.:.....:.|..:: ..||::|:  |..|::||.:.||:..:
Human    61 NGYVQSPRFPNSYPRNLLLTWRLHSQENTRIQLVFDNQFGLEEAENDICRYDFVEVEDISETSTI 125

  Fly  1862 I-GVYCGN-EVPGVIHSR-GAIWMKFKSDDDNVGE-GFMASY--------------NYE------ 1902
            | |.:||: |||..|.|| ..|.:.|||||..|.: ||...|              |:|      
Human   126 IRGRWCGHKEVPPRIKSRTNQIKITFKSDDYFVAKPGFKIYYSLLEDFQPAAASETNWESVTSSI 190

  Fly  1903 ---HHNELNGTEGTIESPHFPSKFQ--DPV--------PYSWRITVDKEYVVAISLLYLRDLDQP 1954
               .:|..:.|:.|:.:.....|..  |.|        |.||:..::..|           ||.|
Human   191 SGVSYNSPSVTDPTLIADALDKKIAEFDTVEDLLKYFNPESWQEDLENMY-----------LDTP 244

  Fly  1955 HLNFYDG--YSDIGARIEV--TDPDETIISST---------------NVVYFT---------SNR 1991
            .   |.|  |.|..:::::  .:.|....|.|               |||:|.         .|.
Human   245 R---YRGRSYHDRKSKVDLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFFPRCLLVQRCGGNC 306

  Fly  1992 GPFKLNW 1998
            |...:||
Human   307 GCGTVNW 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CubnNP_727348.2 cubilin_NTD 21..149 CDD:412063
EGF_CA 156..190 CDD:238011
EGF_CA 192..233 CDD:238011
EGF_CA 282..322 CDD:214542
EGF_CA 324..367 CDD:214542
EGF 430..457 CDD:394967
EGF_CA 469..503 CDD:238011
CUB 509..622 CDD:238001
CUB 627..737 CDD:238001
CUB 744..849 CDD:412131
CUB 853..970 CDD:238001
CUB 978..1094 CDD:238001
CUB 1100..1211 CDD:238001
CUB 1216..1330 CDD:238001
CUB 1446..1549 CDD:238001
CUB 1554..1667 CDD:238001
CUB 1792..1899 CDD:238001 39/105 (37%)
CUB 1910..1998 CDD:412131 25/125 (20%)
CUB 2019..2133 CDD:238001
CUB 2140..2242 CDD:238001
CUB 2263..2379 CDD:238001
CUB 2385..2511 CDD:238001
CUB 2516..2630 CDD:238001
CUB <2833..2892 CDD:412131
CUB 2898..3008 CDD:238001
CUB 3011..3127 CDD:238001
CUB 3130..3241 CDD:238001
CUB 3254..3363 CDD:238001
CUB 3379..3508 CDD:238001
CUB 3531..3601 CDD:412131
CUB 3623..3733 CDD:238001
PDGFDNP_079484.1 CUB 55..168 CDD:238001 39/106 (37%)
PDGF 270..365 CDD:238079 10/44 (23%)
Blue background indicates that the domain is not in the aligned region.

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