DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cubn and Mfrp

DIOPT Version :10

Sequence 1:NP_727348.2 Gene:Cubn / 326235 FlyBaseID:FBgn0052702 Length:3750 Species:Drosophila melanogaster
Sequence 2:NP_001101607.1 Gene:Mfrp / 315597 RGDID:1307477 Length:590 Species:Rattus norvegicus


Alignment Length:321 Identity:86/321 - (26%)
Similarity:122/321 - (38%) Gaps:64/321 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1387 PTATMPGGLYIVDGRNVQEIVTPQAMNISGEVLTVVHNASNVNFQLDYRIDGCMEELRGTFGFFQ 1451
            ||..:|.   ...........||.........::..|..:            |...|.|..|||.
  Rat   113 PTGVIPS---TTPNTTTTTTTTPAITGRQEAAMSPTHQTT------------CGGLLPGPSGFFS 162

  Fly  1452 SPNYPKMYPNNLECYWLITVEQDSAIELTINNIDLEDSPNCTKDALTVSNHKNSVEVHERHCGST 1516
            |||||.:||.:..|.|.|.|.....|:|.|..:..|....|..|.|.:|.......:  |.||.|
  Rat   163 SPNYPDLYPPHSHCVWHIQVATGQTIQLKIQVLSTESMLACLFDRLEISPAPTGPLL--RMCGKT 225

  Fly  1517 TKLVITSSGHRLHVRFISDNSHNGLGFEATYRTV------------------------------- 1550
            ....:.::...|.|.|:|||...|.||:|.|:.|                               
  Rat   226 PPATVNTNTSHLRVSFVSDNDVEGSGFQAWYQAVAPGHWSCTHYEFHCDLLLCLKQDSVCDGIKD 290

  Fly  1551 -------------KATCGGKLTARNGVIESPNYPLNYPAHSRCEWQVEVSQHHQIVFEMADLNLE 1602
                         ...|||.||..:||..:||||.:||....|.|.::|...::|..|..:.:||
  Rat   291 CIDGSDEANCSAKTLGCGGNLTELSGVFSTPNYPQHYPHQQLCTWYIKVPVGYRIRLEFHNFSLE 355

  Fly  1603 SGYDCNWDYLEAYDLTEDDTEGERLFKVCGDETEDDKLLSSSSNMAVVRFISDDSVSKKGF 1663
            ...:|.:||:|.|:.:...|... |.:.||.| ....|:||...:.|: |.:|..:|..||
  Rat   356 EQTECKFDYVEVYEASNSGTFSS-LGRFCGAE-PPSHLVSSQHQLTVI-FKTDLGISSGGF 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CubnNP_727348.2 cubilin_NTD 21..149 CDD:412063
EGF_CA 156..190 CDD:238011
EGF_CA 192..233 CDD:238011
EGF_CA 282..322 CDD:214542
EGF_CA 324..367 CDD:214542
EGF 430..457 CDD:394967
EGF_CA 469..503 CDD:238011
CUB 509..622 CDD:238001
CUB 627..737 CDD:238001
CUB 744..849 CDD:412131
CUB 853..970 CDD:238001
CUB 978..1094 CDD:238001
CUB 1100..1211 CDD:238001
CUB 1216..1330 CDD:238001
CUB 1446..1549 CDD:238001 37/102 (36%)
CUB 1554..1667 CDD:238001 39/110 (35%)
CUB 1792..1899 CDD:238001
CUB 1910..1998 CDD:412131
CUB 2019..2133 CDD:238001
CUB 2140..2242 CDD:238001
CUB 2263..2379 CDD:238001
CUB 2385..2511 CDD:238001
CUB 2516..2630 CDD:238001
CUB <2833..2892 CDD:412131
CUB 2898..3008 CDD:238001
CUB 3011..3127 CDD:238001
CUB 3130..3241 CDD:238001
CUB 3254..3363 CDD:238001
CUB 3379..3508 CDD:238001
CUB 3531..3601 CDD:412131
CUB 3623..3733 CDD:238001
MfrpNP_001101607.1 CUB 150..258 CDD:238001 40/109 (37%)
LDLa 266..300 CDD:238060 0/33 (0%)
CUB 307..419 CDD:238001 39/110 (35%)
CRD_FZ 476..590 CDD:143549
Blue background indicates that the domain is not in the aligned region.

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