DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cubn and neto1l

DIOPT Version :10

Sequence 1:NP_727348.2 Gene:Cubn / 326235 FlyBaseID:FBgn0052702 Length:3750 Species:Drosophila melanogaster
Sequence 2:XP_021325973.1 Gene:neto1l / 100331363 ZFINID:ZDB-GENE-091207-1 Length:548 Species:Danio rerio


Alignment Length:565 Identity:129/565 - (22%)
Similarity:198/565 - (35%) Gaps:153/565 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1792 CGS-IYNALSGKFTSPYYPASYPPNIECLWLLEASMGNSLSLTL-ESMDLEKSESCNRDYLEVRE 1854
            ||: :.....|.||||.||..|||..||::::||.....:.|.. |...:|.|..|..|::|||:
Zfish    40 CGTWVKEPEGGLFTSPNYPNKYPPERECIYIIEAPPRQCIDLFFDEKYSIEPSWECKFDHIEVRD 104

  Fly  1855 ESES-GQLIGVYCGNEVPGVIHSRGA-IWMKFKSDDDNVGEGFMASYNYEH-------------- 1903
            .... ..:||.|||.:.|..|.|.|. :|:||.:|.:....||.||||:..              
Zfish   105 GPFGFSPIIGRYCGQQNPPYIRSSGRYLWIKFVADGELEAMGFSASYNFTSDPDFKDIGVPKPLP 169

  Fly  1904 --HNELNGTEGTIESPHFPSKFQ----DPVPYSWRITVDKEYVVAISLLYLRDLD---------- 1952
              ..|:.|.||.|||.......:    :.|...|.|.....     |.:|||.||          
Zfish   170 FCEFEMGGPEGIIESQQITKDGRALQTEAVDCKWYIRAPPR-----SKIYLRFLDYEMQNSNECK 229

  Fly  1953 QPHLNFYDGYSDI----GARIEVTDPDETIISSTNVVYFTSNRGP----FKLNWNRLSKEALRSN 2009
            :.::..|||.|.:    .........|..::|:..|:...::.|.    |::.:....:....::
Zfish   230 RNYVAVYDGSSSVEDLRNKFCSTVANDVMLVSALGVIRMWADEGSRKSRFRILFTTFQEPPCEAD 294

  Fly  2010 RTAEERTRQCGNQLITIDRSVIGFHSPGYP---------------------NGYEQDLNCFWTLV 2053
             |....:..|.|..:..:    |..:..||                     ||....:.|...|:
Zfish   295 -TFFCHSNMCINNTLVCN----GIQNCVYPWDENHCKEKRKANILDSLNNTNGTIIGVTCCIVLI 354

  Fly  2054 ---------PSNPAMHAVLTLSQIDLEIFSEDCIADYVKIFSGSDLQNWSELRTLCSLPTESSDR 2109
                     ...|....:|.....|..:|.|        :|....   ..||.||.|....|:|.
Zfish   355 LLIVSVIVQIKQPRKKYILRREDFDPTMFQE--------VFQEPP---HYELCTLRSAAATSADL 408

  Fly  2110 VFHGRPYLRVEFVTDPSVNKTGFNGIVRTACG-SEITASKGLVNITEILKVLPRPNHDCVWTIKV 2173
            .     .|..:|.:...:.:.....|....|| |:|:::||           .|.|      :..
Zfish   409 A-----ELAEDFESYHKLRRASSRCIHEHHCGSSQISSNKG-----------SRTN------LSA 451

  Fly  2174 RQGRRIKI--DFPDFQL-----QNNMASGSSDCRNYLLLRNGNDEDSPFLGRGKYCE--DVVHEV 2229
            |......|  |.|...:     |.|.       ||.|::|:...:|:.     ..||  |.:.||
Zfish   452 RDAAAAAILTDLPPQPMRPLPPQTNR-------RNILVMRHTYSQDAT-----DACELDDELEEV 504

  Fly  2230 LNTSSNKAYIKFHFASPPRFL-----------VSFRFEEL--RYT 2261
            ..||..   :..|..:..|.|           .|.::|.:  |||
Zfish   505 PTTSHR---LSRHEKAVQRLLENSAILDQYERASMKYENVDRRYT 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CubnNP_727348.2 cubilin_NTD 21..149 CDD:412063
EGF_CA 156..190 CDD:238011
EGF_CA 192..233 CDD:238011
EGF_CA 282..322 CDD:214542
EGF_CA 324..367 CDD:214542
EGF 430..457 CDD:394967
EGF_CA 469..503 CDD:238011
CUB 509..622 CDD:238001
CUB 627..737 CDD:238001
CUB 744..849 CDD:412131
CUB 853..970 CDD:238001
CUB 978..1094 CDD:238001
CUB 1100..1211 CDD:238001
CUB 1216..1330 CDD:238001
CUB 1446..1549 CDD:238001
CUB 1554..1667 CDD:238001
CUB 1792..1899 CDD:238001 41/110 (37%)
CUB 1910..1998 CDD:412131 23/109 (21%)
CUB 2019..2133 CDD:238001 24/143 (17%)
CUB 2140..2242 CDD:238001 26/111 (23%)
CUB 2263..2379 CDD:238001
CUB 2385..2511 CDD:238001
CUB 2516..2630 CDD:238001
CUB <2833..2892 CDD:412131
CUB 2898..3008 CDD:238001
CUB 3011..3127 CDD:238001
CUB 3130..3241 CDD:238001
CUB 3254..3363 CDD:238001
CUB 3379..3508 CDD:238001
CUB 3531..3601 CDD:412131
CUB 3623..3733 CDD:238001
neto1lXP_021325973.1 CUB 40..153 CDD:238001 43/112 (38%)
CUB <199..285 CDD:238001 18/90 (20%)
LDLa 291..325 CDD:238060 6/38 (16%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.