DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(1)G0320 and Ssr1

DIOPT Version :9

Sequence 1:NP_001285058.1 Gene:l(1)G0320 / 326234 FlyBaseID:FBgn0028327 Length:302 Species:Drosophila melanogaster
Sequence 2:XP_038951805.1 Gene:Ssr1 / 361233 RGDID:1310961 Length:299 Species:Rattus norvegicus


Alignment Length:314 Identity:123/314 - (39%)
Similarity:182/314 - (57%) Gaps:44/314 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LMFLMLMVLPIVICTFSAPNKFGAYAA--------EAVEDDLVDVEGEEGAV-------TGEDAE 53
            |:.|.|:..|..:.....|.  |:.|.        |.|||.:::.|.:|..|       ..|:.|
  Rat     7 LLLLFLLAFPAAVLLRGGPG--GSLAVAQDLTEDEETVEDPIIEDEDDEAEVEEDEPTDLAEEKE 69

  Fly    54 ADEDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLPGGKPVEFLIGFTNKGAEEFVIETVEASFRY 118
            .:||..:...:||:|||.:||.|     |:  |.|....|:||:||||||.|:|::|:::|||||
  Rat    70 EEEDVSSEPEASPSADTTILFVK-----GE--DFPANNIVKFLVGFTNKGTEDFIVESLDASFRY 127

  Fly   119 PMDFNYFIQNFSAVAYNREVKPGFESTVSYTFLPSDQFAGRPFGLNIALAYRDANGIQYNEAVFN 183
            |.|:.::||||:|:..|..|.|..::|..|:|:|::...||||||.|.|.|:|.||..:.:||||
  Rat   128 PQDYQFYIQNFTALPLNTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 192

  Fly   184 ETVLISEVDEGLDGETFFLYVLLAGIVVLLLVIGQQYLLGSSGKRKRAAAKKVIETGTANDSTID 248
            :||.:.|.::||||||.|:|:.|||: .||:|:|...|| .|.||||...|  :|.||::.:.:|
  Rat   193 QTVTVIEREDGLDGETIFMYMFLAGL-GLLVVVGLHQLL-ESRKRKRPIQK--VEMGTSSQNDVD 253

  Fly   249 YDWVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAASQQSPKQRKVKRSAGDD 302
            ..|:|||||..:.    :|:..|.||:            :.|::|..|||.|.|
  Rat   254 MSWIPQETLNQIM----QSRRDKASPR------------RLPRKRAQKRSVGSD 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(1)G0320NP_001285058.1 TRAP_alpha 4..297 CDD:281839 118/307 (38%)
Ssr1XP_038951805.1 TRAP_alpha 18..291 CDD:397813 118/301 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352690
Domainoid 1 1.000 201 1.000 Domainoid score I2930
eggNOG 1 0.900 - - E1_KOG1631
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2368
Inparanoid 1 1.050 201 1.000 Inparanoid score I3704
OMA 1 1.010 - - QHG52580
OrthoDB 1 1.010 - - D1349929at2759
OrthoFinder 1 1.000 - - FOG0005711
OrthoInspector 1 1.000 - - oto95962
orthoMCL 1 0.900 - - OOG6_103262
Panther 1 1.100 - - LDO PTHR12924
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5414
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

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