DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp2 and ARP1

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_011997.1 Gene:ARP1 / 856530 SGDID:S000001171 Length:384 Species:Saccharomyces cerevisiae


Alignment Length:391 Identity:141/391 - (36%)
Similarity:215/391 - (54%) Gaps:27/391 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLHVDDLMVGDEASQLRSLL 73
            :|.|||:|.:|.|::|...|..:...:||.      .|...:.::.|. .|..:|:.|.:||.||
Yeast    15 VVIDNGSGIIKAGFSGEERPKALEYCLVGN------TKYDKVMLEGLQ-GDTFIGNNAQKLRGLL 72

  Fly    74 EVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGF 138
            ::.||:::|||.:||.|..:|.|.........:.....:|:||.||||.||||:|.:|:||.:..
Yeast    73 KLRYPIKHGVVEDWDSMELIWSYVLNEVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDV 137

  Fly   139 DSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYL-IKLL 202
            .:.|::..|||:|||.|..:|.|:|.|:|.....|:|:.||||....|:||.|.|||..| .:|.
Yeast   138 SALYVSNPAVLSLYASGRTTGCVVDCGEGYCSTVPIYDGFALPASMMRMDIGGADITEQLQFQLR 202

  Fly   203 LLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALE-TTVLVESYTLPDGRVIKVGGERFEA 266
            ...|.:...|::.|.||.||||:||:..:|:.|:...|: |..|:.::.|||||.|:||.:|:.|
Yeast   203 KSAGVSLFSSSEREIVRTMKEKVCYLAKNIKKEEEKYLQGTQDLISTFKLPDGRCIEVGNDRYRA 267

  Fly   267 PEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLYL 331
            ||.||.|.:|.:...|::::...:|...|:|:|..|...|:||||:|...|...|:      |: 
Yeast   268 PEILFSPQIIGLGYDGLSDMCMQSIWKVDLDLRKPLLSSIILSGGTTTLKGFGDRM------LW- 325

  Fly   332 ERVLKNDTEKLAK--FKIRIEDPPRRKDMVFIGGAVLAEV-TKDRDGFWMSKQEYQEQGLKVLQK 393
                  |.|.|.|  .||:|..|..||...:|||::|..: |..|  .|..|.::.|...:|...
Yeast   326 ------DLEALTKGTSKIKIIAPSERKYTTWIGGSILTGLSTFQR--LWTKKSDWLEDSTRVYSN 382

  Fly   394 L 394
            |
Yeast   383 L 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 140/388 (36%)
ARP1NP_011997.1 ACTIN 12..384 CDD:214592 141/391 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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