DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp2 and ARP3

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_012599.3 Gene:ARP3 / 853528 SGDID:S000003826 Length:449 Species:Saccharomyces cerevisiae


Alignment Length:448 Identity:145/448 - (32%)
Similarity:226/448 - (50%) Gaps:79/448 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVCDNGTGFVKCGYAGSNFPTHIFP--------------SMVGRPM------------------- 40
            :|.|||||..|.|:||::.|:.:||              |.||.|.                   
Yeast     9 VVMDNGTGLTKLGFAGNDSPSWVFPTAIATAAPSNTKKSSGVGAPSAVSNEASYFGNSTSATNFN 73

  Fly    41 -----IRAVNKIGDIEVKDLHVDDLMVGDE---ASQLRSLLEVSYPMENGVVRNWDDMCHVWDYT 97
                 :.:.|..|....:||   |..:|:|   |||..| ..:|||:.:|.|.|||.|...|:.:
Yeast    74 GATGGLLSNNLSGKRGTEDL---DFYIGNEALVASQGPS-YSLSYPIRHGQVENWDHMERFWENS 134

  Fly    98 FGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLTLYAQGL------ 156
            .. |.:..:|.:...||||||:||.:|||::.|:.||.:.....|||:||||.|.|...      
Yeast   135 IF-KYLRTEPEDHFFLLTEPPLNPPENREQVAEIFFESFNCAGLYIAVQAVLALAASWTSSKVTD 198

  Fly   157 --ISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVR 219
              ::|.||||||||||:.||.|.:.:....:.:.|||||||.::..||..||.|   .....|..
Yeast   199 RSLTGTVIDSGDGVTHVIPVAEGYVIGSAIKNIPIAGRDITLFIQSLLRERGEA---DTSLRTAE 260

  Fly   220 IMKEKLCYIGYDIEME--------QRLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLI 276
            .:|::.||:..||..|        .:.|   ..:||:......:|:.:|.|||.|||..|.|.:.
Yeast   261 KIKQEYCYVCPDIVKEFNKFDKDPSKFA---QFVVENQEKTRRKVVDIGYERFLAPEIFFNPEIA 322

  Fly   277 NVEG----PGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKN 337
            :.:.    |.:.:   .||||..||:|..||.:|||||||||:.....||:|::|.:...|:.::
Yeast   323 SSDFLTPLPTVVD---QTIQACPIDVRKGLYNNIVLSGGSTMFKDFGRRLQRDLKSIVNNRIAQS 384

  Fly   338 DT---EKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQ 392
            :.   .|.....:.:....::::.|:.||::||: |.:..|:..:|::|:|.|.::::
Yeast   385 ELLSGTKSTGVDVSVISHRKQRNAVWFGGSLLAQ-TAEFKGYCHTKKDYEEYGPEIVR 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 145/448 (32%)
ARP3NP_012599.3 COG5277 1..445 CDD:227602 145/448 (32%)
PTZ00280 5..446 CDD:240343 145/448 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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