DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp2 and ACT2

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001327851.1 Gene:ACT2 / 821411 AraportID:AT3G18780 Length:377 Species:Arabidopsis thaliana


Alignment Length:385 Identity:177/385 - (45%)
Similarity:248/385 - (64%) Gaps:20/385 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLHVDDLMVGDEASQLRSLL 73
            ||||||||.||.|:||.:.|..:|||:||||....| .:|      ::..|..|||||...|.:|
plant    10 IVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGV-MVG------MNQKDAYVGDEAQSKRGIL 67

  Fly    74 EVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGF 138
            .:.||:|:|||.|||||..:|.:|| ..::.|.|....:||||.|:||..|||||.::|||.:..
plant    68 TLKYPIEHGVVSNWDDMEKIWHHTF-YNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 131

  Fly   139 DSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLL 203
            .:.|:||||||:|||.|..:|:|:||||||:|..|:||.|:|||...|||:||||:|.||:|:|.
plant   132 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILT 196

  Fly   204 LRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGRVIKVGGERFEAPE 268
            .|||.|..:|:.|.||.:||||.::..|.|.|...:..::.:.::|.||||:||.:|.|||..||
plant   197 ERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITIGAERFRCPE 261

  Fly   269 ALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLYLER 333
            .||||..:.:|..||.|..:|:|...|:|||.:||.:||||||:||:.|:..|:.:||..|    
plant   262 VLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEITAL---- 322

  Fly   334 VLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQK 393
                   ..:..||::..||.||..|:|||::||.::..:. .|:||.||.|.|..::.:
plant   323 -------APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ-MWISKAEYDEAGPGIVHR 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 177/383 (46%)
ACT2NP_001327851.1 NBD_sugar-kinase_HSP70_actin 3..377 CDD:418402 177/385 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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