DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp2 and AT2G42170

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001323727.1 Gene:AT2G42170 / 818817 AraportID:AT2G42170 Length:329 Species:Arabidopsis thaliana


Alignment Length:333 Identity:151/333 - (45%)
Similarity:214/333 - (64%) Gaps:16/333 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LHVDDLMVGDEASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPM 119
            ::.:||.|||:|.....:|.:.||||:|||.|||||..:|.:|| ..::.:.|....:||||.|:
plant     4 MNENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTF-YSELRVAPEEHPVLLTEAPL 67

  Fly   120 NPTKNREKMIEVMFEKYGFDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLT 184
            ||..:||||.::|||.:...|.||.:||.|:|:|.|..:|.|:||||||::|.|:||..||||..
plant    68 NPKADREKMTQIMFETFAVPSMYIGMQAALSLHASGRTTGTVLDSGDGVSYIVPIYEGSALPHAI 132

  Fly   185 RRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESY 249
            .|||:|||.:|.||:|:::.|||.   ||:.|.||.:||:..||..|.|.|...|.:::.:..:|
plant   133 LRLDLAGRHLTNYLMKIMMERGYT---SAEREVVRDIKEQFGYIALDYEQEMEKATKSSAIDRTY 194

  Fly   250 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTM 314
            .||||:||.:|.|||..||.||||.||.:|..||.|..:|:|...|.|||.:||.:||||||:||
plant   195 ELPDGQVITIGAERFRCPEVLFQPSLIGMETSGIHEKTYNSIMKCDDDIRKDLYGNIVLSGGTTM 259

  Fly   315 YPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMS 379
            :.|:..|:.:||..|           ..|..:|:|..||.||..|:|||::||.:: ..:..|::
plant   260 FRGIEERMTKEINAL-----------AAANMRIKIVAPPERKYSVWIGGSILASLS-TYEQMWIT 312

  Fly   380 KQEYQEQG 387
            |.||:|.|
plant   313 KAEYEENG 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 151/333 (45%)
AT2G42170NP_001323727.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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