DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp2 and ACT9

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_181739.1 Gene:ACT9 / 818809 AraportID:AT2G42090 Length:366 Species:Arabidopsis thaliana


Alignment Length:386 Identity:153/386 - (39%)
Similarity:230/386 - (59%) Gaps:27/386 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKD-LHVDDLMVGDEASQLRSL 72
            ||||.|.|.|:.|:||...|..:||.:||||             :| |:.::..||:|....|.:
plant     4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRP-------------RDGLNPNESYVGEEGHANRDI 55

  Fly    73 LEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYG 137
            |.:..|||:|:|.|||||..:|.||| ..::.:||....:||||.|.||..|||||.::|||.:.
plant    56 LTLKDPMEHGIVNNWDDMEKIWHYTF-YNELRVDPEEHPVLLTEAPYNPKANREKMTQIMFESFD 119

  Fly   138 FDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLL 202
            ..:.|:::|:||.||:.|..:|||:|.|:.|:|..||||.:||||...|||:.|||:|.|||:::
plant   120 VPAMYVSMQSVLYLYSSGRTTGVVLDLGERVSHTVPVYEGYALPHGILRLDLGGRDLTDYLIEIM 184

  Fly   203 LLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGRVIKVGGERFEAP 267
            ..|||.:..||:.|.||.:||||||:..|.|.|.....:...:.::|.||||:.|.:..|||..|
plant   185 TERGYTYTTSAEREIVRDIKEKLCYVALDYEQEMEKTTKGWTIDKTYVLPDGQEITIEAERFMCP 249

  Fly   268 EALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLYLE 332
            |.||||.:|..|..||.|...|:|....:|.|.::|.:|:::||:||..|:..|:.:|:..|.  
plant   250 EVLFQPSVIGKESSGIHEATRNSILKCPVDTRRDMYGNILMTGGTTMLHGIKERMTKELNALV-- 312

  Fly   333 RVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQK 393
                     .:..|:::..||..:..|:|||::||.::.... .|::|.||:|.|..::.:
plant   313 ---------PSSMKVKVVVPPESECSVWIGGSILASLSTFHQ-MWITKDEYEEHGAAIVHR 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 153/384 (40%)
ACT9NP_181739.1 ACTIN 2..365 CDD:214592 153/386 (40%)
NBD_sugar-kinase_HSP70_actin 1..365 CDD:302596 153/386 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.