DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp2 and Actrt3

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_083966.1 Gene:Actrt3 / 76652 MGIID:1923902 Length:369 Species:Mus musculus


Alignment Length:391 Identity:136/391 - (34%)
Similarity:229/391 - (58%) Gaps:38/391 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLHVDDLMVGDEASQLRSLL 73
            :|.|||:|.:|.|.||:..|..::|:::||......:.          ..:|.|||:|.:.||.|
Mouse     8 VVIDNGSGMIKAGLAGTREPQFVYPNILGRSKGHTADS----------RQELCVGDQAQERRSFL 62

  Fly    74 EVSYPMENGVVRNWDDM----CHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFE 134
            .:|||:|.|::.:|.||    .|::||     .::::.::..:|:|||.:||..:|:.:.||.||
Mouse    63 SISYPVERGLISSWGDMEIMWKHIYDY-----NLNLNASDGPVLVTEPALNPLADRQHISEVFFE 122

  Fly   135 KYGFDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLI 199
            ..|..:.|::.||||.|:|.|..:|:|::||.|:|...|::|.:.|.|..::|::||.|:|.||:
Mouse   123 NLGVPAFYMSAQAVLALFAAGFTTGLVLNSGAGITQCVPIFEGYCLSHGVKQLNVAGSDLTSYLM 187

  Fly   200 KLLLLRGYAFNHSADFETVRIMKEKLCYI--GYDIEMEQRLALETTVLVESYTLPDGRVIKVGGE 262
            .||...|.....:.|.:.|..:||..||:  .|:.||.:...||     :.||||||:.:|:..:
Mouse   188 MLLKGDGIMLLRTGDRKVVTDIKENACYVAMNYEDEMTKDSNLE-----KIYTLPDGKTVKLHKQ 247

  Fly   263 RFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIK 327
            .|..|||||.|:|:||:.|||.::.|.:|...|.|:|...:.:|:||||||.:|||..||.:::.
Mouse   248 LFHCPEALFSPYLVNVDAPGIDKMCFGSIMKCDTDLRNSFFSNIILSGGSTSFPGLDKRLIKDVA 312

  Fly   328 QLYLERVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQ 392
            :|           ..|...:::..||.||..|::||::||.::..:| .|::..|::|.|..::.
Mouse   313 KL-----------APANTAVQVIAPPERKISVWMGGSILASLSAFQD-MWITAAEFEEVGPNIVH 365

  Fly   393 K 393
            :
Mouse   366 Q 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 136/389 (35%)
Actrt3NP_083966.1 ACTIN 5..369 CDD:214592 136/391 (35%)
NBD_sugar-kinase_HSP70_actin 9..369 CDD:302596 136/390 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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