DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp2 and actc2

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001002066.1 Gene:actc2 / 570210 ZFINID:ZDB-GENE-040625-35 Length:377 Species:Danio rerio


Alignment Length:392 Identity:184/392 - (46%)
Similarity:252/392 - (64%) Gaps:20/392 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DSKGRNVIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLHVDDLMVGDEA 66
            |......:|||||:|.||.|:||.:.|..:|||:||||..:.| .:|      :...|..|||||
Zfish     3 DDDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGV-MVG------MGQKDSYVGDEA 60

  Fly    67 SQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEV 131
            ...|.:|.:.||:|:|::.|||||..:|.:|| ..::.:.|.....||||.|:||..|||||.::
Zfish    61 QSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPTLLTEAPLNPKANREKMTQI 124

  Fly   132 MFEKYGFDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITR 196
            |||.:...:.|:||||||:|||.|..:|:|:||||||||..|:||.:||||...|||:||||:|.
Zfish   125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTD 189

  Fly   197 YLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGRVIKVGG 261
            ||:|:|..|||:|..:|:.|.||.:||||||:..|.|.|...|..::.|.:||.||||:||.:|.
Zfish   190 YLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGN 254

  Fly   262 ERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREI 326
            |||..||.||||..|.:|..||.|..:|:|...|||||.:||.:.|||||:|||||:..|:::||
Zfish   255 ERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEI 319

  Fly   327 KQLYLERVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVL 391
            ..|           ..:..||:|..||.||..|:|||::||.::..:. .|:|||||.|.|..::
Zfish   320 TAL-----------APSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ-MWISKQEYDEAGPSIV 372

  Fly   392 QK 393
            .:
Zfish   373 HR 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 183/386 (47%)
actc2NP_001002066.1 PTZ00281 4..377 CDD:173506 183/391 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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