DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp2 and Arp53D

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_477037.2 Gene:Arp53D / 36879 FlyBaseID:FBgn0011743 Length:411 Species:Drosophila melanogaster


Alignment Length:396 Identity:169/396 - (42%)
Similarity:248/396 - (62%) Gaps:30/396 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDSKGRN-VIVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLHVDDLMVGD 64
            :||...: .:|.|||:|..|.|::..:.|..:|||:||||  |.:|.:     .|..:.|.::|:
  Fly    40 VDSNSHHAAVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRP--RHLNVL-----LDSVIGDSVIGE 97

  Fly    65 EASQLRSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMI 129
            .|::.|.:|.:.||:|:|:|:|||:|..||.:|:  :.:..||.:...||||.|:||.||||||.
  Fly    98 AAARKRGILTLKYPIEHGMVKNWDEMEMVWQHTY--ELLRADPMDLPALLTEAPLNPKKNREKMT 160

  Fly   130 EVMFEKYGFDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDI 194
            |:|||.:...:.|:|:||||:|||.|...|:|:||||||||..|:||.|||||...|:|:||||:
  Fly   161 EIMFEHFQVPAFYVAVQAVLSLYATGRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDL 225

  Fly   195 TRYLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGRVIKV 259
            |.||.||||.||.....||:.|.||.:||||||:..:...|..|..:    ||:|.||||:.|.:
  Fly   226 TDYLCKLLLERGVTMGTSAEREIVREIKEKLCYVSMNYAKEMDLHGK----VETYELPDGQKIVL 286

  Fly   260 GGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLER 324
            |.|||..|||||||.|:..|..||.|...::|...|:|:|.::|.:||||||:||:        |
  Fly   287 GCERFRCPEALFQPSLLGQEVMGIHEATHHSITNCDMDLRKDMYANIVLSGGTTMF--------R 343

  Fly   325 EIKQLYLERVLKNDTEKLA--KFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQG 387
            .|:..:|:     |..::|  ..:|::...|.|:..|:.||:|||.:|..:: .|:...||:|.|
  Fly   344 NIEHRFLQ-----DLTEMAPPSIRIKVNASPDRRFSVWTGGSVLASLTSFQN-MWIDSLEYEEVG 402

  Fly   388 LKVLQK 393
            ..::.:
  Fly   403 SAIVHR 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 167/389 (43%)
Arp53DNP_477037.2 ACTIN 46..411 CDD:214592 167/390 (43%)
NBD_sugar-kinase_HSP70_actin 47..411 CDD:302596 167/389 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467792
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11937
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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