DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arp2 and Actr1a

DIOPT Version :10

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:XP_006231532.1 Gene:Actr1a / 294010 RGDID:1307025 Length:396 Species:Rattus norvegicus


Alignment Length:409 Identity:166/409 - (40%)
Similarity:240/409 - (58%) Gaps:51/409 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPM-IRAVNKIGDIEVKDLHVDDLMVG--------- 63
            :|.|||:|.:|.|:||...|.:.||:.||||. :|.:  .|.:|      .|:.:|         
  Rat    12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVM--AGALE------GDIFIGPKAEVIPSP 68

  Fly    64 -DEASQL----------RSLLEVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEP 117
             :|||.|          |.||.:.||||:|:|::|:||..:|.|.:...::........:||||.
  Rat    69 TEEASGLQRAYLSTTEHRGLLSIRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEA 133

  Fly   118 PMNPTKNREKMIEVMFEKYGFDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPH 182
            |:||.||||:..||.||.:...:.:|::||||:|||.|..:|||:||||||||..|:||.||:||
  Rat   134 PLNPRKNRERAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPH 198

  Fly   183 LTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVE 247
            ...|:||||||::|:|...|...||.|:.|::||.|:.:||:.||:..:.:.::.|..|..    
  Rat   199 SIMRIDIAGRDVSRFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKA---- 259

  Fly   248 SYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGS 312
            .|.||||..|::|..||.|||.||:|.||..|..||.|:....||.:|:|:|..|:.:|||||||
  Rat   260 QYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVLSGGS 324

  Fly   313 TMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGF- 376
            |::.|...||..|:|:|..:.|           ||||..|..|....:|||::||.:    |.| 
  Rat   325 TLFKGFGDRLLSEVKKLAPKDV-----------KIRISAPQERLYSTWIGGSILASL----DTFK 374

  Fly   377 --WMSKQEYQEQGLKVLQK 393
              |:||:||:|.|.:.:.:
  Rat   375 KMWVSKKEYEEDGARSIHR 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ASKHA_NBD_Arp2 7..393 CDD:466821 166/407 (41%)
Actr1aXP_006231532.1 ASKHA_NBD_Arp1 9..395 CDD:466820 166/409 (41%)

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