DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arp2 and ACTR1B

DIOPT Version :9

Sequence 1:NP_001259621.1 Gene:Arp2 / 32623 FlyBaseID:FBgn0011742 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_005726.1 Gene:ACTR1B / 10120 HGNCID:168 Length:376 Species:Homo sapiens


Alignment Length:388 Identity:169/388 - (43%)
Similarity:239/388 - (61%) Gaps:29/388 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IVCDNGTGFVKCGYAGSNFPTHIFPSMVGRPMIRAVNKIGDIEVKDLHVDDLMVGDEASQLRSLL 73
            :|.|||:|.:|.|:||...|.:.||:.||||....| ..|.:|      .||.:|.:|.:.|.||
Human    12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRV-MAGALE------GDLFIGPKAEEHRGLL 69

  Fly    74 EVSYPMENGVVRNWDDMCHVWDYTFGPKKMDIDPTNTKILLTEPPMNPTKNREKMIEVMFEKYGF 138
            .:.||||:||||:|:||..:|.|.:...::........:||||.|:||:|||||..||.||.:..
Human    70 TIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNV 134

  Fly   139 DSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLL 203
            .:.:|::||||:|||.|..:|||:||||||||..|:||.||:||...|:||||||::|||..||.
Human   135 PALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLR 199

  Fly   204 LRGYAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGRVIKVGGERFEAPE 268
            ..|..|:.||:||.||.:||:.||:..:.:.::  ||||..:  .||||||..:.||..||.|||
Human   200 KEGVDFHTSAEFEVVRTIKERACYLSINPQKDE--ALETEKV--QYTLPDGSTLDVGPARFRAPE 260

  Fly   269 ALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLYLER 333
            .||||.|:..|..|:.|:....|..:|:|:|..|:.:||||||||::.|...||..|:|:|..:.
Human   261 LLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKD 325

  Fly   334 VLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGF---WMSKQEYQEQGLKVLQK 393
            :           ||:|..|..|....:|||::||.:    |.|   |:||:||:|.|.:.:.:
Human   326 I-----------KIKISAPQERLYSTWIGGSILASL----DTFKKMWVSKKEYEEDGSRAIHR 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arp2NP_001259621.1 ACTIN 6..393 CDD:214592 169/386 (44%)
ACTR1BNP_005726.1 NBD_sugar-kinase_HSP70_actin 5..376 CDD:418402 169/388 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D649708at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.