DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and GMC1

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_010794.3 Gene:GMC1 / 852117 SGDID:S000002914 Length:608 Species:Saccharomyces cerevisiae


Alignment Length:573 Identity:128/573 - (22%)
Similarity:213/573 - (37%) Gaps:149/573 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 VMVVNGQLP--GMNIEVCYGDTVVADVIN---SMHE------------TTTIHWHGMHQRLTPFM 185
            |:.:||...  |..|.|..|||:...:.|   |..|            :|.:|:||:......| 
Yeast    48 VISINGYSATFGPEIRVKSGDTLNLKLTNWICSEEEASKDSDVWKDYCSTALHFHGVVPLANEF- 111

  Fly   186 DGVPHVTQYPIEAGQAFRYRFEVDHG--GTNWWHSHTEHQRAFGLAGPLVVR------------- 235
            ||:|.:||..|..|:::.|.|.:|..  ||.|:|||:..|...|:.|.|:|.             
Yeast   112 DGIPGLTQPTIGYGESYWYNFTIDQSTCGTFWYHSHSSVQYGDGMRGVLIVECDDYDNHVANTIN 176

  Fly   236 ------------MPPKLNPHA-HLYDFDMSEHVIMIQDWVHNF---------------VESVAEN 272
                        :..|.:.|. .|.|:::.|.:|.:.||..|:               .:...:.
Yeast   177 SVRDIETLDDGVVTMKKDKHTKELTDYEVQERIITLSDWYTNWNLDILNDKVLSSTGGTDPKFDG 241

  Fly   273 ILINGR---GRNLKKGVKAAKPTLYAHFPVVRGGRYRFRVIFNGVSNCPISFSIDKHDLVVIASD 334
            .||||:   |..:|.|.......|              |::.:|:|...: |.:|...|:|:.:|
Yeast   242 SLINGKSSDGETIKIGFNTEYLLL--------------RIVNSGMSGTQV-FHLDGFQLIVLEAD 291

  Fly   335 GNDIEPVEVQRIMFHGAERFDFVLHANQEVS-----NYWIRVKGYS----FCAKNQLHQEAVLHY 390
            |..|:|..||.|.....:|:..::....:.|     |...::.||.    :..|...|.:...:.
Yeast   292 GIMIKPFIVQTINLAVGQRYTILVKLKSDTSFIRMINGCNKMMGYITKQWWFYKEGAHLDLPKNP 356

  Fly   391 RDADTRALDTHTLSYAYDAPGKTLNELGDDASGARAGNSISLANLNAQRPEPEVAPSVTFYTSMN 455
            .|.....|           ||.|..||..|....:..|         ::...:..|...|     
Yeast   357 NDVSIEHL-----------PGFTKAELYRDIEPTQEEN---------KKLRTKADPVAVF----- 396

  Fly   456 AFEVRQGEGFRFQMDDISFSMPKMSLLQTRNLGVGQFFCNRSQQADLGFNCRQRHCQCSNVIQVP 520
            .|:      :.:..|:.:          .:..|.|.:..|....::          ...:.::..
Yeast   397 EFD------YAYYKDEST----------KQKYGTGMYKVNERTFSE----------YVKDPVRFG 435

  Fly   521 ANQQVEFVISSLSQTPHPIHLHGYTFRVVGMGVLG---------EQKIGQIEQIDKKTPLPRRAK 576
            .|:..:.||:||....||.|:||:.|:::.:|..|         |.|.....|.|.: .|.|..|
Yeast   436 FNETYDIVINSLDHMRHPWHMHGHHFQIISLGNKGDGPFHKDVQEGKAWSRYQNDLR-HLARTGK 499

  Fly   577 GAPLKDSVQVPAFGYTILRFYSNSPGYWMFHCHISPHSENGMAAVVRVGEDVE 629
            ...::||:.:....|.:||..:..||.|:.|||:..|...|:..|..|....|
Yeast   500 APMVRDSINIAGNSYAVLRINTEMPGKWLLHCHVEWHMMKGLGIVFEVPTTTE 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 127/568 (22%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 37/115 (32%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 34/163 (21%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 40/171 (23%)
GMC1NP_010794.3 SufI 24..547 CDD:225043 126/566 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343592
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S12213
OMA 1 1.010 - - QHG58299
OrthoFinder 1 1.000 - - FOG0000424
OrthoInspector 1 1.000 - - mtm9215
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.800

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