DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and LPR2

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_565008.1 Gene:LPR2 / 843444 AraportID:AT1G71040 Length:581 Species:Arabidopsis thaliana


Alignment Length:581 Identity:111/581 - (19%)
Similarity:188/581 - (32%) Gaps:216/581 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 LPGMNIEVCYG-------------------DTVVADVINSMHE--TTTIHWH-GMHQRLTPFMDG 187
            :||..||..||                   |..::..| ..|.  .|.:|.| |:|:   |..||
plant   102 VPGPTIEAVYGVDTYVTWRNHLPLHHILPWDPTISPAI-PKHGGIPTVVHLHGGIHE---PTSDG 162

  Fly   188 VPHVTQYPIEAGQAFRYRFE---------------VDHGGTNWWHSH----TEHQRAFGLAGPLV 233
                     .|...|...|:               ....|..|:|.|    |......||.|..:
plant   163 ---------NADSWFTAGFKETGSKWTKKTTHYVNKQQPGNMWYHDHAAGLTRVNLLAGLLGSYI 218

  Fly   234 VR-----MPPKLNPHAHLYD-----FDMS-------------EHVIMIQDWVHNFVESVAENILI 275
            :|     .|.:| |....:|     ||.|             .:..:...|.   .|...:.|::
plant   219 LRHSSVESPLRL-PTGREFDRPLVIFDRSFRKDGSIYMNATGNNPTIHPQWQ---PEYFGDAIIV 279

  Fly   276 NGRGRNLKKGVKAAKPTLYAHFPVVRGGRYRFRVIFNGVSNCPI--SFSIDKHDLVVIASDGNDI 338
            ||:          |.|.|     .||..:||||:  ...||...  .|..:..|.:|:.||...:
plant   280 NGK----------AWPRL-----TVRRRKYRFRI--TNASNARFFRFFFSNGLDFIVVGSDSAYL 327

  Fly   339 -EPVEVQRIMFHGAERFDFVLHANQEVSNYWIRV--------KGYSFCAKNQLHQEAVLHYR-DA 393
             :||..:.::...:|..|.::..::..|...|..        .|.....:|....:.:::|: :.
plant   328 AKPVSTKSVLLAPSEIVDVLVDFSKSTSKTAILANNAPYPYPSGDPVTEENSKVMKFIINYKSEV 392

  Fly   394 DTRALDTHTLSYAYDAPGKTLNELGDDASGARAGNSISLANLNAQRPEPEVAPSV-TFYTSMNAF 457
            ||..:....:.|                                  |...|:.|. |.|.:|..:
plant   393 DTSIIPKKLIEY----------------------------------PPAHVSTSTRTRYIAMFEY 423

  Fly   458 EVRQGEGFRFQMDDISFSMPKMSLLQTRNLGVGQFFCNRSQQADLGFNCRQRHCQCSNVIQVPAN 522
            .....|.....::.:.::.|   :.:|..:|..:.                              
plant   424 VSSIDEPTHLYINGLPYNAP---VTETPKIGTSEV------------------------------ 455

  Fly   523 QQVEFVISSLSQTPHPIHLHGYTFRVVGMGVLGEQKIGQIEQIDK-----KTPLPRRAKGAPLKD 582
                :.:.:|::..||:|:|...|:|:....|.:.: ..||.:.|     |..:.:.|:|.  |.
plant   456 ----WEVINLTEDNHPLHIHLGLFKVLEQTALVKSE-EFIECMTKRNDAVKCEISKYARGN--KT 513

  Fly   583 SVQVPAFGY-------------TILRF---YSN---------SPGYWMFHCHISPHSENGM 618
            :|.|...|:             .::||   :||         .||| ::||||..|.:|.|
plant   514 AVTVHERGWKNVFKMMPGHVTKILVRFSYIHSNESYSFDATQEPGY-VYHCHILDHEDNMM 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 111/581 (19%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 28/130 (22%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 29/147 (20%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 35/181 (19%)
LPR2NP_565008.1 CuRO_1_BOD_CotA_like 69..220 CDD:259913 28/130 (22%)
SufI 82..580 CDD:225043 111/581 (19%)
CuRO_2_CotA_like 236..386 CDD:259936 33/169 (20%)
CuRO_3_CotA_like 413..577 CDD:259958 39/202 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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