DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mco4 and sks14

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_564697.1 Gene:sks14 / 842005 AraportID:AT1G55560 Length:549 Species:Arabidopsis thaliana


Alignment Length:551 Identity:125/551 - (22%)
Similarity:214/551 - (38%) Gaps:156/551 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 GLESEVMVVNGQLPGMNIEVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIE 197
            |:..:|:::|||.||.|:.....:.||.:|.|.:.|...:.|.|:..|...:.|||.. |..||.
plant    41 GVPQKVILINGQFPGPNLNSTSNNNVVINVFNHLDEPFLLTWSGIQHRKNCWQDGVAG-TSCPIP 104

  Fly   198 AGQAFRYRFE-VDHGGTNWWHSHTE-HQRAFGLAGPLVVRMPPKL---NPHAHLYDFDMSEHVIM 257
            |||.|.|.|: .|..|:.:::..|. |:.|.|..|   :|:..:|   .|:|...|    ::.::
plant   105 AGQNFTYHFQPKDQIGSYFYYPTTSLHRFAGGFGG---LRVNSRLLIPVPYADPED----DYTVL 162

  Fly   258 IQDW-------VHNFVES-----VAENILINGR-----GRNLKKGVKAAKPTLYAHFPVVRGGRY 305
            :.||       :.||::|     :...:||||:     |:|        :|.    |.:..|..|
plant   163 LGDWYTAGHTALKNFLDSGRTLGLPNGVLINGKSGKVGGKN--------EPL----FTMKPGKTY 215

  Fly   306 RFRVIFNGVSNCPISFSIDKHDLVVIASDG-----NDIEPVEVQRIMFHGAERFDFVLHANQEVS 365
            ::|:...|..: .::|.|..|.:.::..:|     ||.:.::|     |..:.|..::.|||...
plant   216 KYRLCNVGFKS-TLNFRIQNHKMKLVEMEGSHVIQNDYDSLDV-----HVGQCFSVLVTANQAAK 274

  Fly   366 NYWIRVKGYSFCAKNQLHQEAVLHYRDADTRA---LDTHTLSYAYDAPGKTLNELGDDASGARAG 427
            :|:: |....| .|.:|....|:.|..::.:|   |....:.:|:     :||:.     .:...
plant   275 DYYM-VASTRF-LKKELSTVGVIRYEGSNVQASTELPKAPVGWAW-----SLNQF-----RSFRW 327

  Fly   428 NSISLANLNAQRPEPE---------VAPSVTFYTSMNAFEVRQGEGFR----------------F 467
            |..|    ||.||.|:         :..|:....|.:..:.:...||.                |
plant   328 NLTS----NAARPNPQGSYHYGKINITRSIKLVNSKSVVDGKVRFGFNGVSHVDTETPLKLAEYF 388

  Fly   468 QMDDISFS--------MPKMSLLQTRNLGVGQFFCNRSQQADLGFNCRQRHCQCSNVIQVPANQQ 524
            ||.:..|.        ..|::.|..:                            .||:.:.....
plant   389 QMSEKVFKYNVIKDEPAAKITALTVQ----------------------------PNVLNITFRTF 425

  Fly   525 VEFVISSLSQTPHPIHLHGYTFRVVGMGVLGEQKIGQIEQIDKKTPLPR---RAKGAPLKDSVQV 586
            ||.:..:..:|....||.||:|..|.            .:..:.||..|   ....|..:.:|||
plant   426 VEIIFENHEKTMQSFHLDGYSFFAVA------------SEPGRWTPEKRENYNLLDAVSRHTVQV 478

  Fly   587 -PAFGYTILRFYSNSPGYWMFHCHISPHSEN 616
             |.....||..:.|: |.|      :..|||
plant   479 YPKSWSAILLTFDNA-GMW------NIRSEN 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 125/551 (23%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 35/103 (34%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 35/158 (22%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 32/161 (20%)
sks14NP_564697.1 PLN02354 1..549 CDD:177987 125/551 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.960

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