DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and sks17

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_569041.1 Gene:sks17 / 836826 AraportID:AT5G66920 Length:546 Species:Arabidopsis thaliana


Alignment Length:539 Identity:125/539 - (23%)
Similarity:217/539 - (40%) Gaps:82/539 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 GLESEVMVVNGQLPGMNIEVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIE 197
            |:..:|:::|||.||..:||...|.::.::||.:.:...:.|:|:.||...:.|||.. |..||:
plant    52 GVPQQVILINGQFPGPKLEVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-TNCPIQ 115

  Fly   198 AGQAFRYRFEV-DHGGT-NWWHSHTEHQRAFGLAGPLVVRMPPKLNPHAHLYDFDMSEHVIMIQD 260
            ....|.|:|:. |..|| |::.|...|:.|.|.....|...|....|    |....::..:::.|
plant   116 PNSNFTYKFQTKDQIGTFNYFPSTAFHKAAGGFGAINVYARPGIPIP----YPLPTADFTLLVGD 176

  Fly   261 WV---HNFVES---------VAENILINGRGRNLKKGVKAAKPTLYAHFPVVRGGRYRFRVIFNG 313
            |.   |..::.         ..:.:||||:.::...|              .:|..|..|:...|
plant   177 WFKTNHKTLQQRLDSGGVLPFPDGMLINGQTQSTFSG--------------DQGKTYMLRISNVG 227

  Fly   314 VSNCPISFSIDKHDLVVIASDGNDIEPVEVQRIMFHGAERFDFVLHANQEVSNYWIRVKGYSFCA 378
            :|: ..:|.|..|.:.|:..:|:.:...:...:..|..:....::..||...:|:| |....| .
plant   228 LSS-TFNFRIQGHTMKVVEVEGSHVIQTDYDSLDIHVGQSLAVLVTLNQSPKDYYI-VASTRF-I 289

  Fly   379 KNQLHQEAVLHYRDADTRALDTHTLSYAYDAPGKTLNELGDDASGARAGNSISLANL--NAQRPE 441
            :::|....:|.|.::...|        :.|.|.....||......||...    .||  ||.||.
plant   290 RSKLSVMGLLRYSNSRVPA--------SGDPPALPPGELVWSMRQARTFR----WNLTANAARPN 342

  Fly   442 PE-------VAPSVTFYTSMNAFEVRQGEGFRFQMDDISFSMPKMSLLQTRNLGV-GQFFCNRSQ 498
            |:       ::|:.||..| |:..:..|:. |:.::.:|:...:..|....:.|: |.|..|..|
plant   343 PQGSFHYGMISPTKTFVFS-NSAPLINGKQ-RYAVNGVSYVKSETPLKLADHFGISGVFSTNAIQ 405

  Fly   499 QADLGFNCRQRHCQCSNVIQVPANQQVEFVISSLSQTPHPIHLHGYTFRVVGMGVLGEQKIGQIE 563
            ...    ........::|:|...:..:|.|..:..::....||.||.|.|||.|      .||  
plant   406 SVP----SNSPPTVATSVVQTSHHDFLEIVFQNNEKSMQSWHLDGYDFWVVGFG------SGQ-- 458

  Fly   564 QIDKKTPLPRRAKG---APLKDSVQVPAFGYTILRFYSNSPGYWMFHCHISPHSENGMAAVVRVG 625
                .||..|....   |..:.:.||....:|.:....::.|.|.....|.....:|....::|.
plant   459 ----WTPAKRSLHNLVDALTRHTTQVYPESWTTILVSLDNQGMWNMRSAIWERQYSGQQFYLKVW 519

  Fly   626 EDVEM---KMCPVSNCGLC 641
            ..|:.   :..|..|..||
plant   520 NSVQSLANEYNPPDNLQLC 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 120/519 (23%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 34/103 (33%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 27/148 (18%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 35/171 (20%)
sks17NP_569041.1 PLN02835 28..546 CDD:178429 125/539 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

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