DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and LAC17

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_200810.1 Gene:LAC17 / 836124 AraportID:AT5G60020 Length:577 Species:Arabidopsis thaliana


Alignment Length:577 Identity:140/577 - (24%)
Similarity:227/577 - (39%) Gaps:138/577 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 VNGQLPGMNIEVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIEAGQAFRYR 205
            ||||.||..:....||.|:..|:|.:....::||||:.|..:.:.||..::||.||:.||::.|.
plant    48 VNGQFPGPKLIAREGDQVLIKVVNQVPNNISLHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYN 112

  Fly   206 FE-VDHGGTNWWHSHTEHQRAFGLAGPLVVRMP------PKLNPHAHLYDFDMSEHVIMIQDWVH 263
            :. |...||.|:|:|....|: .:.|||:: :|      |...||        .|..::..:|.:
plant   113 YTIVGQRGTLWYHAHISWLRS-TVYGPLII-LPKRGVPYPFAKPH--------KEVPMIFGEWFN 167

  Fly   264 NFVESVAENILINGRGRNLKKGVK-----------AAKPTLYAHFPVVRGGRYRFRVIFNGVSNC 317
            ...|::.......|.|.|:.....           :||.|.  ...|..|..|..|:| |...|.
plant   168 ADTEAIIRQATQTGGGPNVSDAYTINGLPGPLYNCSAKDTF--RLRVKPGKTYLLRLI-NAALND 229

  Fly   318 PISFSIDKHDLVVIASDGNDIEPVEVQRIMFHGAERFDFVLHANQEV--SNYWIRVKGYSFCAKN 380
            .:.|||..|.:.|:.:|...::|.|.:.|:....:..:.:|......  :::::..:.|.     
plant   230 ELFFSIANHTVTVVEADAIYVKPFETETILIAPGQTTNVLLKTKSSYPSASFFMTARPYV----- 289

  Fly   381 QLHQEAVLHYRDADTRALDTHTLS--YAYDAPGKTLNELGDDASGARAGNSISLANLNAQRPEPE 443
                        ......|..|::  ..|:.|.:|        .||.:..||.  ||...:|...
plant   290 ------------TGQGTFDNSTVAGILEYEPPKQT--------KGAHSRTSIK--NLQLFKPILP 332

  Fly   444 VAPSVTFYT-------SMNA----------------FEVRQGEG------------------FRF 467
            ......|.|       |:|:                |.|..|..                  |..
plant   333 ALNDTNFATKFSNKLRSLNSKNFPANVPLNVDRKFFFTVGLGTNPCNHKNNQTCQGPTNTTMFAA 397

  Fly   468 QMDDISFSMPKMSLLQTRNLGV--GQFFCNRSQQADLGFNC------RQRHCQCSNVIQVPANQQ 524
            .:.:|||:||..:|||:...|.  |.:.........:.||.      .......:|::.:|.|..
plant   398 SISNISFTMPTKALLQSHYSGQSHGVYSPKFPWSPIVPFNYTGTPPNNTMVSNGTNLMVLPYNTS 462

  Fly   525 VEFVI---SSLSQTPHPIHLHGYTFRVVGMGVLGE-------QKIGQIEQIDKKTPLPRRAKGAP 579
            ||.|:   |.|....||:||||:.|.|||.| .|.       :....::.|::.|          
plant   463 VELVMQDTSILGAESHPLHLHGFNFFVVGQG-FGNFDPNKDPRNFNLVDPIERNT---------- 516

  Fly   580 LKDSVQVPAFGYTILRFYSNSPGYWMFHCHISPHSENG--MAAVVRVGEDVEMKMCP 634
                |.||:.|:..:||.:::||.|..|||:..|:..|  ||.:|..|:..:.|:.|
plant   517 ----VGVPSGGWAAIRFLADNPGVWFMHCHLEVHTSWGLRMAWLVLDGDKPDQKLLP 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 137/567 (24%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 35/94 (37%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 27/149 (18%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 53/184 (29%)
LAC17NP_200810.1 laccase 22..577 CDD:274556 140/577 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 85 1.000 Domainoid score I2814
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 216 1.000 Inparanoid score I1224
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 1 1.000 - - FOG0000424
OrthoInspector 1 1.000 - - mtm1062
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X253
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.930

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