DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mco4 and SKS2

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_199961.1 Gene:SKS2 / 835222 AraportID:AT5G51480 Length:592 Species:Arabidopsis thaliana


Alignment Length:601 Identity:126/601 - (20%)
Similarity:213/601 - (35%) Gaps:124/601 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 FRFKLSGKEYIDGIALATQLAANDDCKYADGLESEVMVVNGQLPGMNIEVCYGDTVVADVINSMH 167
            |.|..:|..|:......:.:.|:     ..|:..:|:.|||:.||..|.......|..:|:|.:.
plant    18 FGFSFAGDPYVSYDFTLSYITAS-----PLGVPQQVIAVNGKFPGPVINATTNYNVHVNVLNHLD 77

  Fly   168 ETTTIHWHGMHQRLTPFMDGVPHVTQYPIEAGQAFRYRFEV-DHGGTNWWHSHTEHQRAFGLAGP 231
            |...:.|.|:..|...:.|||.. |..||.....|.|.|:: |..|:.::......|||.|..|.
plant    78 EPLLLTWPGVQMRRNSWQDGVLG-TNCPIPPNWNFTYDFQLKDQIGSYFYSPSLNFQRASGGFGA 141

  Fly   232 LVVR----MP-PKLNPHAHLYDFDMSEHVIMIQDW-------VHNFVES-----VAENILINGRG 279
            |::.    :| |...|.        .|.:.:|.||       :...::|     :.:.:||||:|
plant   142 LIINNRDLVPIPFTEPD--------GEIIFIIGDWYTQNHTALRRILDSGKELGMPDGVLINGKG 198

  Fly   280 -----RNLKKGVKAAKPTLYAHFPVVRGGRYRFRVIFNGVSNCPISFSIDKHDLVVIASDGNDIE 339
                 .::..|::      :....|..|..||.||...|:|. .::|.|..|.|::|.::|....
plant   199 PFKYNSSVPDGIE------HETVNVDPGKTYRIRVHNVGIST-SLNFRIQNHKLLLIETEGRYTS 256

  Fly   340 PVEVQRIMFHGAERFDFVLHANQE-VSNY-------------WIRVKGYSFCAKNQLHQEAVLHY 390
            .:.......|..:.:.|::..:|. .|:|             |.||.|.           .:|||
plant   257 QMNFTDFDVHVGQSYSFLVTMDQNATSDYYIVASARFVNETVWQRVTGV-----------GILHY 310

  Fly   391 RDADTRALDTHTLSYAYDA--PGKTLNE-----LGDDASGARAG--NSISLANLNAQRPEPEVAP 446
            .::...|.....:| |.|.  |...:|:     ....|||||..  .|.....:|..|.      
plant   311 SNSKGPASGPLPVS-ATDVNHPWSAMNQPRAIKQNTSASGARPNPQGSFHYGQINITRT------ 368

  Fly   447 SVTFYTSMNAFEVRQGEGFRFQMDDISFSMPK--MSLLQTRNLGVGQFFCNRSQQADLGFNCRQR 509
                |...:....:.....|..::.|||..|.  |.|.....:           :.|...:...|
plant   369 ----YILRSLPPTKINGKLRATLNGISFVNPSTPMRLADDHKV-----------KGDYMLDFPDR 418

  Fly   510 HCQ------CSNVIQVPANQQVEFVISSLSQTPHPIHLHGYTFRVVGM--GVLGEQKIGQIEQID 566
            ...      .|::|.......::.:..:........|:.||.|.||.|  |:..|.:.......|
plant   419 PLDEKLPRLSSSIINATYKGFIQVIFQNNDTKIQSFHIDGYAFYVVAMDFGIWSEDRNSSYNNWD 483

  Fly   567 KKTPLPRRAKGAPLKDSVQVPAFGYTILRFYSNSPGYWMFHCHISPHSENGMAAVVRV---GEDV 628
                       |..:.:|:|....:|.:....::.|.|............|....:|:   .|:.
plant   484 -----------AVARSTVEVYPGAWTAVLISLDNVGVWNIRVENLDRWYLGQETYMRIINPEENG 537

  Fly   629 EMKMCPVSNCGLCSSV 644
            ..:|.|..|...|.::
plant   538 STEMDPPENVMYCGAL 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 116/552 (21%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 32/103 (31%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 35/167 (21%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 29/177 (16%)
SKS2NP_199961.1 PLN00044 23..589 CDD:165622 124/596 (21%)
CuRO_1_AAO_like_1 28..145 CDD:259915 33/122 (27%)
Cupredoxin 159..310 CDD:302766 35/168 (21%)
Cupredoxin 394..516 CDD:302766 23/143 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 57 1.000 Domainoid score I3987
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.880

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