DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and SKU5

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001190704.1 Gene:SKU5 / 826851 AraportID:AT4G12420 Length:587 Species:Arabidopsis thaliana


Alignment Length:553 Identity:127/553 - (22%)
Similarity:201/553 - (36%) Gaps:126/553 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 GLESEVMVVNGQLPGMNIEVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIE 197
            |:..:|:.:||:.||..|.|...:.:|.:|.|.:.|...:||:|:.||...:.|||.. |..||.
plant    40 GVPQQVIAINGKFPGPTINVTTNENLVVNVRNKLDEGLLLHWNGIQQRRVSWQDGVLG-TNCPIP 103

  Fly   198 AGQAFRYRFEV-DHGGTNWWHSHTEHQRAFGLAGPLVVRMPPKLNPHAHL---YDFDMSEHVIMI 258
            ....:.|.|:| |..|:.::......|||.|..|..||      ||.|.:   :.....:..:.|
plant   104 PKWNWTYEFQVKDQIGSFFYFPSLHFQRASGGFGSFVV------NPRAIIPVPFSTPDGDITVTI 162

  Fly   259 QDW-VHNFVE-----------SVAENILINGRGRNLKKGVKAAKPTLYAHFPVVRGGRYRFRVIF 311
            .|| :.|...           .:.:.:||||:|.........|....:....|..|..||.||..
plant   163 GDWYIRNHTALRKALDDGKDLGMPDGVLINGKGPYRYNDTLVADGIDFETITVHPGKTYRLRVSN 227

  Fly   312 NGVSNCPISFSIDKHDLVVIASDGNDIEPVEVQRIMFHGAERFDFVLHANQEVSN---------- 366
            .|:|. .::|.|..|:||:..|:|:.........:..|..:.:.|::..:|..|:          
plant   228 VGIST-SLNFRIQGHNLVLAESEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASSDYYIVASARV 291

  Fly   367 ----YWIRVKGYSFCAKNQLHQEAVLHYRDADTRALDTHTLSYAYDAPG------KT--LNELGD 419
                .|.||.|.           .:|.|.::..:|       .....||      ||  :|:...
plant   292 VNETIWRRVTGV-----------GILKYTNSKGKA-------KGQLPPGPQDEFDKTFSMNQARS 338

  Fly   420 -----DASGARAG-------NSISLANLNAQRPEPEVAPSVTFYTSMNAFEVRQGEGFRFQMDDI 472
                 .|||||..       .||::.::...|..|.|..|....|::|.               |
plant   339 IRWNVSASGARPNPQGSFKYGSINVTDVYVLRNMPPVTISGKRRTTLNG---------------I 388

  Fly   473 SFSMPKMSLLQTRNLGVGQFFCNRSQQADLGFNCRQRHCQ---CSNVIQVPANQQVEFVISSLSQ 534
            ||..|...:.....|.|...:       .|.|..|.....   .:::|.......:|.|:.:...
plant   389 SFKNPSTPIRLADKLKVKDVY-------KLDFPKRPLTGPAKVATSIINGTYRGFMEVVLQNNDT 446

  Fly   535 TPHPIHLHGYTFRVVGM--GVLGEQKIGQIEQIDKKTPLPRRAKGAPLKDSVQVPAFGYTILRFY 597
            .....|:.||.|.||||  |...|...|...:.|           ...:.::||....::.:...
plant   447 KMQSYHMSGYAFFVVGMDYGEWTENSRGTYNKWD-----------GIARSTIQVYPGAWSAILIS 500

  Fly   598 SNSPGYWMFHCHISPHSEN------GMAAVVRV 624
            .::||.|      :..:||      |....|||
plant   501 LDNPGAW------NLRTENLDSWYLGQETYVRV 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 127/553 (23%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 34/102 (33%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 34/162 (21%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 35/168 (21%)
SKU5NP_001190704.1 PLN00044 20..557 CDD:165622 127/553 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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