DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mco4 and sks11

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_187947.1 Gene:sks11 / 820539 AraportID:AT3G13390 Length:554 Species:Arabidopsis thaliana


Alignment Length:527 Identity:124/527 - (23%)
Similarity:209/527 - (39%) Gaps:107/527 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 GLESEVMVVNGQLPGMNIEVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIE 197
            |:..:|:::|||.||.|:.....:.|:.:|.|::.|...:.|:|:..|...:.||.|. |..||.
plant    43 GVPQQVILINGQFPGPNVNSTSNNNVIINVFNNLDEPFLLTWNGIQHRKNCWQDGTPG-TMCPIM 106

  Fly   198 AGQAFRYRFE-VDHGGTNWWHSHTE-HQRAFGLAGPLVVRMPPKL---NPHAHLYDFDMSEHVIM 257
            .|..:.|.|: .|..|:.:::..|. |:.|.|..|   :|:..:|   .|:|...|    ::.::
plant   107 PGTNYTYHFQPKDQIGSYFYYPSTAMHRSAGGFGG---LRVNSRLLIPVPYADPED----DYTVL 164

  Fly   258 IQDW-------VHNFVES-----VAENILINGRGRNLKKGVKAAKPTLYAHFPVVRGGRYRFRVI 310
            |.||       :..|::|     ..:.|||||:.   .||..:..|.    |.:..|..||.|:.
plant   165 IGDWYTKSHTQLKKFLDSGRTLGRPDGILINGKS---GKGDGSDAPL----FTLKPGKTYRVRIC 222

  Fly   311 FNGVSNCPISFSIDKHDLVVIASDG-----NDIEPVEVQRIMFHGAERFDFVLHANQEVSNYWIR 370
            ..|:.. .::|.|..|.|.::..:|     ||.:.::|     |..:.:..:|.||||..:|:: 
plant   223 NVGLKT-SLNFRIQNHKLKLVEMEGSHVLQNDYDSLDV-----HVGQCYGTILTANQEAKDYYM- 280

  Fly   371 VKGYSFCAKNQLHQEAVLHYRDADTRA---LDTHTLSYAYDAPGKTLNELGDDASGARAGNSISL 432
            |....| .|:.:....:|.|......|   |....:.:|:     :||:.........|      
plant   281 VASSRF-LKSVITTTGLLRYEGGKGPASSQLPPGPVGWAW-----SLNQFRSFRWNLTA------ 333

  Fly   433 ANLNAQRPEPEVAPSVTFYTSMNAFEV-----RQGE---GFRFQMDDISFSMPKMSLLQTRNLGV 489
               :|.||.|:   ....|..:|....     .||:   ..|:.::.:|.:.|:..|......||
plant   334 ---SAARPNPQ---GSYHYGKINITRTIKLVNTQGKVDGKLRYALNGVSHTDPETPLKLAEYFGV 392

  Fly   490 GQFFCNRSQQADLGFNCRQRHCQ----CSNVIQVPANQQVEFVISSLSQTPHPIHLHGYTFRVVG 550
            ...........|   |......:    ..||:.:.....:|.|..:..::....||.||:|..|.
plant   393 ADKVFKYDSITD---NPTPEQIKSIKIVPNVLNITHRTFIEVVFENHEKSVQSWHLDGYSFFAVA 454

  Fly   551 MGVLGEQKIGQIEQIDKKTPLPRRAKGAPLKD-----SVQV-PAFGYTILRFYSNSPGYWMFHCH 609
                          ::..|..|.:.|...|.|     :||| |.....||..:.|. |.|     
plant   455 --------------VEPGTWTPEKRKNYNLLDAVSRHTVQVYPKCWAAILLTFDNC-GMW----- 499

  Fly   610 ISPHSEN 616
             :..|||
plant   500 -NVRSEN 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 124/527 (24%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 31/103 (30%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 38/153 (25%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 34/159 (21%)
sks11NP_187947.1 PLN02354 24..553 CDD:177987 124/527 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.870

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