DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and LAC7

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_187533.1 Gene:LAC7 / 820078 AraportID:AT3G09220 Length:567 Species:Arabidopsis thaliana


Alignment Length:571 Identity:154/571 - (26%)
Similarity:233/571 - (40%) Gaps:149/571 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 VMVVNGQLPGMNIEVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIEAGQAF 202
            :.||||.|||..|.|..||::|..|:|......||||||:..:||.:.||...:||.||:.||.:
plant    46 ITVVNGSLPGPTIRVKEGDSLVIHVLNHSPHNITIHWHGIFHKLTVWADGPSMITQCPIQPGQRY 110

  Fly   203 RYRFEV-DHGGTNWWHSHTEHQRAFGLAGPLVVRMPPKLNPHAHLYDFDM--SEHVIMIQDWVHN 264
            .|||.: ...||.|||:|....|| .:.|.||:|  ||   ..|.|.|..  .|..|:..:|.:.
plant   111 AYRFNITGQEGTLWWHAHASFLRA-TVYGALVIR--PK---SGHSYPFPKPHKEVPILFGEWWNT 169

  Fly   265 FVESVAENIL-------------INGRGRNLKKGVKAAKPTLYAHFPVVRGGRYRFRVIFNGVSN 316
            .|.::.|..:             ||||..||   ...:|..::: ..||:|.||..|:| |...|
plant   170 DVVALEEAAIATGVPPNNSDAYTINGRPGNL---YPCSKDRMFS-LNVVKGKRYLLRII-NAAMN 229

  Fly   317 CPISFSIDKHDLVVIASDGNDIEPVEVQRIMFHGAERFDFVLHANQEV-SNYWIRVKGYSFCAKN 380
            ..:.|.|..|.|.|:|:|.....|.....|:....:..|.:|.|:|.| ::|::....|:     
plant   230 IQLFFKIANHRLTVVAADAVYTAPYVTDVIVIAPGQTIDALLFADQSVDTSYYMAAHPYA----- 289

  Fly   381 QLHQEAVLHYRDADTRALDTHTLSYAYDAPGKTLNELGDDASGARAGNSISLANLNAQRPEPEVA 445
               ....:.:.:..||.: .|     |....||                        .|.:|.:.
plant   290 ---SAPAVPFPNTTTRGV-IH-----YGGASKT------------------------GRSKPVLM 321

  Fly   446 PSV-TFYTSMNAFE--------------------------VRQGEG------------FRFQMDD 471
            |.: :|:.::.|:.                          |..|.|            |...|.:
plant   322 PKLPSFFDTLTAYRFYSNLTALVNGPHWVPVPRYVDEEMLVTIGLGLEACADNTTCPKFSASMSN 386

  Fly   472 ISFSMP-KMSLLQTRNLGV-GQFFCNRSQQADLGFNCRQRHCQCSNVIQ---------------- 518
            .||.:| |:|:|:.....| |.|..:...|..:.|:...     .||.|                
plant   387 HSFVLPKKLSILEAVFHDVKGIFTADFPDQPPVKFDYTN-----PNVTQTNPGLLFTQKSTSAKI 446

  Fly   519 VPANQQVEFVISS---LSQTPHPIHLHGYTFRVVGMGVLGEQKIGQIEQIDKKTPLPRRAK---- 576
            :..|..||.|:.:   ::...||:||||:.|.|:..|      .|..:      |...|:|    
plant   447 LKFNTTVEVVLQNHALIAAESHPMHLHGFNFHVLAQG------FGNYD------PSRDRSKLNLV 499

  Fly   577 GAPLKDSVQVPAFGYTILRFYSNSPGYWMFHCHISPHSE--NGMAAVVRVG 625
            ....::::.||..|:.::||.:|:||.|:|||||..|..  .||..||:.|
plant   500 DPQSRNTLAVPVGGWAVIRFTANNPGAWIFHCHIDVHLPFGLGMIFVVKNG 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 154/571 (27%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 44/97 (45%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 37/150 (25%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 52/185 (28%)
LAC7NP_187533.1 laccase 23..550 CDD:274556 153/569 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 85 1.000 Domainoid score I2814
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 216 1.000 Inparanoid score I1224
OMA 1 1.010 - - QHG58299
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 1 1.000 - - FOG0000424
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X253
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.940

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