DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and LAC3

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_180580.1 Gene:LAC3 / 817571 AraportID:AT2G30210 Length:570 Species:Arabidopsis thaliana


Alignment Length:589 Identity:151/589 - (25%)
Similarity:247/589 - (41%) Gaps:97/589 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 ETCKRY-------LQSKFRFKLSGKEYIDGIALATQLAANDDCKYADGLESEVMVVNGQLPGMNI 150
            |:.:|:       |.:.|.|..|.:.::....: |.......|:     ..:.:.||||.||..:
plant     2 ESFRRFSLLSFIALLAYFAFLASAEHHVHQFVI-TPTPVKRLCR-----THQSITVNGQYPGPTL 60

  Fly   151 EVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIEAGQAFRYRFEV-DHGGTN 214
            .|..||::...|||......:|||||:.|...|:.||..::||.||..||.:.|||:: |..||.
plant    61 VVRNGDSLAITVINRARYNISIHWHGIRQLRNPWADGPEYITQCPIRPGQTYTYRFKIEDQEGTL 125

  Fly   215 WWHSHTEHQRAFGLAGPLVVRMPPKL-NPHAHLYDFDMSEH---VIMIQDWVHNFVE-------- 267
            |||:|:...|| .:.|.|::.  |:| :|    |.|.|.:.   :::.:.|..|.::        
plant   126 WWHAHSRWLRA-TVYGALIIY--PRLGSP----YPFSMPKRDIPILLGEWWDRNPMDVLKQAQFT 183

  Fly   268 ----SVAENILINGRGRNLKKGVKAAKPTLYAHFPVVRGGRYRFRVIFNGVSNCPISFSIDKHDL 328
                :|::...|||:..:|.:..:|..    ..||:..|...:.||| |...|..:.||:..|..
plant   184 GAAANVSDAYTINGQPGDLYRCSRAGT----IRFPIFPGETVQLRVI-NAGMNQELFFSVANHQF 243

  Fly   329 VVIASDGNDIEPVEVQRIMFHGAERFDFVLHANQEVSNYWIRVKGYSFCAK--NQLHQEAVLHYR 391
            .|:.:|....:|.....||....:..:.:|.|||....|::..:.|:....  :.....|:|.|.
plant   244 TVVETDSAYTKPFTTNVIMIGPGQTTNVLLTANQRPGRYYMAARAYNSANAPFDNTTTTAILQYV 308

  Fly   392 DADTRALDTHTLSYAYDAPGK--------TLNELGDDASGARAGNSISLANLNAQRPEPEVAPSV 448
            :|.||.           ..|:        .|....|.|:.....|.:....   :.|.|:.....
plant   309 NAPTRR-----------GRGRGQIAPVFPVLPGFNDTATATAFTNRLRYWK---RAPVPQQVDEN 359

  Fly   449 TFYT---------SMNAFEVRQGEGFRF--QMDDISFSMPKM-SLLQTRNLGVGQFFCN-----R 496
            .|:|         :.|:...:...|.||  .|:::||.:|:. |::|....|....|..     .
plant   360 LFFTVGLGLINCANPNSPRCQGPNGTRFAASMNNMSFVLPRSNSVMQAYYQGTPGIFTTDFPPVP 424

  Fly   497 SQQADLGFNCRQ---RHCQCSNVIQVPANQQVEFVISSLS-QTP--HPIHLHGYTFRVVGMGVLG 555
            ..|.|...|..:   :..:.:...::.....|:.|:...| .||  ||:|||||.|.|||.|   
plant   425 PVQFDYTGNVSRGLWQPIKGTKAYKLKYKSNVQIVLQDTSIVTPENHPMHLHGYQFYVVGSG--- 486

  Fly   556 EQKIGQIEQIDKKTPLPRRAKGAPLKDSVQVPAFGYTILRFYSNSPGYWMFHCHISPHSENGMAA 620
               .|...  .:..|........|.::::..|..|:..:||.:::||.|..||||..|...|:|.
plant   487 ---FGNFN--PRTDPARFNLFDPPERNTIGTPPGGWVAIRFVADNPGAWFMHCHIDSHLGWGLAM 546

  Fly   621 VVRV 624
            |..|
plant   547 VFLV 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 143/543 (26%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 41/103 (40%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 32/153 (21%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 47/169 (28%)
LAC3NP_180580.1 laccase 25..570 CDD:274556 145/566 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 85 1.000 Domainoid score I2814
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 216 1.000 Inparanoid score I1224
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 1 1.000 - - FOG0000424
OrthoInspector 1 1.000 - - mtm1062
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X253
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.930

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