DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mco4 and sks16

DIOPT Version :9

Sequence 1:NP_573249.1 Gene:Mco4 / 326221 FlyBaseID:FBgn0052557 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001324736.1 Gene:sks16 / 816895 AraportID:AT2G23630 Length:546 Species:Arabidopsis thaliana


Alignment Length:532 Identity:133/532 - (25%)
Similarity:210/532 - (39%) Gaps:104/532 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 GLESEVMVVNGQLPGMNIEVCYGDTVVADVINSMHETTTIHWHGMHQRLTPFMDGVPHVTQYPIE 197
            |:..:|:::|||.||..||....:.:|.:|||.:.|...|.|:|:.||...:.|||.. |..||:
plant    50 GVPQQVILINGQFPGPPIEGVTNNNIVVNVINKLDEPFLITWNGIKQRKMSWQDGVLG-TNCPIQ 113

  Fly   198 AGQAFRYRFEV-DHGGTNWWHSHTEHQRAFGLAGPL------VVRMP-PKLNPHAHLYDFDMSEH 254
            ...::.|.|:: |..||..:.:.|...||.|..|.|      |:.:| ||  |.|   ||     
plant   114 PKSSWTYHFQLKDQIGTYAYFASTSMHRASGAFGALNVNQRSVIFVPYPK--PDA---DF----- 168

  Fly   255 VIMIQDWV---HNFVE---------SVAENILINGRGRNLKKGVKAAKPTLYAHFPVVRGGRYRF 307
            .:::.||.   |..::         ...:.:||||..:.|.             |....|..|||
plant   169 TLLVSDWYKMGHKELQRRLDSSRALPPPDGLLINGASKGLV-------------FTGQHGKIYRF 220

  Fly   308 RVIFNGVSNCPISFSIDKHDLVVIASDGNDIEPVEVQRIMFHGAERFDFVLHANQEVSNYWIRVK 372
            |:...|:|. .|:|.|..|.:.::..:|:.......:.:..|..:....::.....|.:|:| |.
plant   221 RISNVGIST-SINFRIQGHMMTLVEVEGSHTLQEVYESLDIHVGQSVTVLVTLKAPVKDYFI-VA 283

  Fly   373 GYSFCAKNQLHQEAVLHYRDADTRALDTHTLSYAYDAPGKTLNELGDDASGARAGNSISLANL-- 435
            ...| .|..|....:|.|:.:..|  .:|.|..     |.|.: :......||   :|.| ||  
plant   284 STRF-TKPILTTTGILSYQGSKIR--PSHPLPI-----GPTYH-IHWSMKQAR---TIRL-NLTA 335

  Fly   436 NAQRPEPE------VAPSVTFYTSMNAFEVRQGEGFRFQMDDISFSMP--KMSLLQTRNL-GVGQ 491
            ||.||.|:      ..|....:...|...:..|: .|:.::.:|:..|  .:.|....|: ||..
plant   336 NAARPNPQGSFHYGTIPINRTFVLANGRAMINGK-LRYTVNRVSYVNPATPLKLADWFNIPGVFN 399

  Fly   492 F--FCN--RSQQADLGFNCRQRHCQCSNVIQVPANQQVEFVISSLSQTPHPIHLHGYTFRVVGMG 552
            |  ..|  ....:.||          ::|..|..::.||||..:...:....||.|.:..|||.|
plant   400 FKTIMNIPTPGPSILG----------TSVFDVALHEYVEFVFQNNEGSIQSWHLDGTSAYVVGYG 454

  Fly   553 VLGEQKIGQIEQIDKKTPLPRRAKGAPLKDSV-----QVPAFGYTILRFYSNSPGYWMFHCHISP 612
                          ..|....:.:|..|.|:|     ||....:|.:....::.|.|.....|..
plant   455 --------------SGTWNMAKRRGYNLVDAVSRHTFQVYPMSWTSILVSLDNKGMWNLRSQIWS 505

  Fly   613 HSENGMAAVVRV 624
            ....|....|||
plant   506 RRYLGQELYVRV 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mco4NP_573249.1 ascorbase 132..626 CDD:274555 133/532 (25%)
CuRO_1_tcLCC2_insect_like 132..235 CDD:259927 37/108 (34%)
CuRO_2_tcLCC_insect_like 253..390 CDD:259951 30/148 (20%)
CuRO_3_tcLLC2_insect_like 468..633 CDD:259972 38/169 (22%)
sks16NP_001324736.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2132
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454773at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11709
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

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