DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sk2 and LCB4

DIOPT Version :9

Sequence 1:NP_647762.3 Gene:Sk2 / 326219 FlyBaseID:FBgn0052484 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_014814.1 Gene:LCB4 / 854342 SGDID:S000005697 Length:624 Species:Saccharomyces cerevisiae


Alignment Length:589 Identity:135/589 - (22%)
Similarity:240/589 - (40%) Gaps:128/589 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 SSGNPNSPAISASGDHHRPATTPSKCST------NSRDNIPSDGGDVSAFLYVFAYVLKKRSLRS 160
            |..|..:| :|.|....:.....:|.:|      :|:||.||.|...:..|....:.:.|.  ..
Yeast   120 SLSNDKAP-VSESQSFPKKDKWDTKTNTVKVSPDDSQDNSPSLGIKDNQQLIELTFAVPKG--HD 181

  Fly   161 ELHRERTVL---TLRFRSFDTFEDNMREADRWYRSLRWQLHRTLEEIFVAPTVDERRRR-VLVLL 221
            .:.::.|:|   ..|....:|.|:|:...             |:|||......:.:|.| :||::
Yeast   182 VIPQKLTLLIDHVSRKSRANTGEENISSG-------------TVEEILEKSYENSKRNRSILVII 233

  Fly   222 NPKSGSGDAREVFNMHVTPVLNEAEVPYDLYVTKHSNFAIEFLSTRCLDAWCCVVAVGGDGLFHE 286
            ||..|.|.|:.:|.....|:|.|:....::..||::..||:......:..:..:....|||:.:|
Yeast   234 NPHGGKGTAKNLFLTKARPILVESGCKIEIAYTKYARHAIDIAKDLDISKYDTIACASGDGIPYE 298

  Fly   287 IVNGLLQRQDWAHVLPHLALGIIPCGSGNGLARSIAHCYNEPYFSKPVLGAALTVISGRSSPMDV 351
            ::|||.:|.|.......||:..:||||||.::.| .|..|.|.:      |||.::....:.:|:
Yeast   299 VINGLYRRPDRVDAFNKLAVTQLPCGSGNAMSIS-CHWTNNPSY------AALCLVKSIETRIDL 356

  Fly   352 VRVQLQSRSLY-------SFLSIGWGLISDVDIESERIRMLGYQRFTVWTLYRLVNLRTYNGRIS 409
            :   ..|:..|       ||||..:|:|::.||.:|.||.:|..||.:...:.::..:.|...: 
Yeast   357 M---CCSQPSYMNEWPRLSFLSQTYGVIAESDINTEFIRWMGPVRFNLGVAFNIIQGKKYPCEV- 417

  Fly   410 YLLTDHEVSSTHSATGYAAQRRMQ----------SSRSCNTHIDMLNGPAPIYHSSAEYLPQEFA 464
                         ...|||:.:.:          .::.|.|.     .|.|..:||.:.|     
Yeast   418 -------------FVKYAAKSKKELKVHFLENKDKNKGCLTF-----EPNPSPNSSPDLL----- 459

  Fly   465 DVISLETSINQSFRSRCDSWLSGGSRRSFYYSISESIYHSLADESEFAGLAAASLENRQQNYGPA 529
                                    |:.:...|..:.:..:..:|..|           :..|   
Yeast   460 ------------------------SKNNINNSTKDELSPNFLNEDNF-----------KLKY--- 486

  Fly   530 SELPDLNEPLSEDQGWLVEEGEFVMMHAVYQT----HLGIDCHFAPKAQLNDGTIYLILIRAGIS 590
                .:.||:..|  |...:.|......::.|    ::..|..|.|.|...||||.|::..|.|.
Yeast   487 ----PMTEPVPRD--WEKMDSELTDNLTIFYTGKMPYIAKDTKFFPAALPADGTIDLVITDARIP 545

  Fly   591 RPHLLSFLYNMSSGTHLPESHDDHVKVLPVRAFRLEPYDNHGIITVDGERVEFGPLQAEVLPGIA 655
            ...:...|.::..|:|:.|....|.|:|   |:::.|....|:.:||||:....|||.|::|.:.
Yeast   546 VTRMTPILLSLDKGSHVLEPEVIHSKIL---AYKIIPKVESGLFSVDGEKFPLEPLQVEIMPMLC 607

  Fly   656 RVMV 659
            :.::
Yeast   608 KTLL 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sk2NP_647762.3 PLN02958 <213..639 CDD:215517 103/447 (23%)
DAGK_cat 216..354 CDD:279163 41/138 (30%)
LCB4NP_014814.1 LCB5 225..540 CDD:224513 89/392 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343287
Domainoid 1 1.000 90 1.000 Domainoid score I1770
eggNOG 1 0.900 - - E1_COG1597
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 155 1.000 Inparanoid score I1088
Isobase 1 0.950 - 0 Normalized mean entropy S4295
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001465
OrthoInspector 1 1.000 - - mtm9231
orthoMCL 1 0.900 - - OOG6_101566
Panther 1 1.100 - - O PTHR12358
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R653
SonicParanoid 1 1.000 - - X918
TreeFam 1 0.960 - -
1413.730

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