DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sk2 and Sk1

DIOPT Version :9

Sequence 1:NP_647762.3 Gene:Sk2 / 326219 FlyBaseID:FBgn0052484 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_572717.1 Gene:Sk1 / 32089 FlyBaseID:FBgn0030300 Length:641 Species:Drosophila melanogaster


Alignment Length:683 Identity:283/683 - (41%)
Similarity:401/683 - (58%) Gaps:95/683 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KTTSPSSASSRATPPGTQDADEG--HDVSDTFYT-SQRKKGSHVFRVRLDATGFTLQRESPGGSI 68
            ||..||      ||....:...|  .::|:.|:. :.|:|.|...:|:|...|..|:||:.....
  Fly    18 KTHEPS------TPTSDTEVASGTPTELSEIFFVDNSRRKQSIKIQVKLCPEGVYLRRETEEDDH 76

  Fly    69 VKEQHVRISDIVGARCMRPKKSRRLAMSGACACSSGNPNSPAISASGDHHRPATTPSKCSTNSRD 133
            :.||.:||.||:|:|..|..|.|  |..|..:|.  |||.|...|                   |
  Fly    77 INEQLIRIDDIIGSRYGRRLKKR--ARGGLNSCR--NPNVPGQEA-------------------D 118

  Fly   134 NIPSDGGDVSAFLYVFAYVLKKRSLRSELHRERTVLTLRFRSFDTFEDNMREADRWYRSLRWQLH 198
            :.|.  .|.||:||::||:.|::.||    |.:|:..|||||.:.:..|::.|:.|:.::|  .|
  Fly   119 SEPD--SDNSAYLYIYAYLKKEKPLR----RVQTLRILRFRSSNDYGVNLQTAEMWHHTIR--KH 175

  Fly   199 RTLEEIFVAPTVDERRRRVLVLLNPKSGSGDAREVFNMHVTPVLNEAEVPYDLYVTKHSNFAIEF 263
            :....   :.:..:..:::|:|||||||||..||:|...|.|:|.||||.|||.:|.|..:|.||
  Fly   176 KRGNG---SSSPADCGKQLLILLNPKSGSGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEF 237

  Fly   264 LSTR--CLDAWCCVVAVGGDGLFHEIVNGLLQRQDWAHVLPHLALGIIPCGSGNGLARSIAHCYN 326
            :.||  .|..:..:|...|||||:|::|||::|.||......|.|||||||||||||:|:||..|
  Fly   238 VRTRRDLLTRYSGIVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHHCN 302

  Fly   327 EPYFSKPVLGAALTVISGRSSPMDVVRVQLQSRS----LYSFLSIGWGLISDVDIESERIRMLGY 387
            |||..||:|.|.||.::|:|:|||||||:|.:|.    :|||||:|||||:|:||||||:|.:|.
  Fly   303 EPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWGLIADIDIESERLRSIGA 367

  Fly   388 QRFTVWTLYRLVNLRTYNGRISYLL----------TDHEVSSTHSATGYAAQRRMQSSRSCNTHI 442
            ||||:|.:.||:.||:|.||:||||          ...|:.:..:|.|      ::||...|   
  Fly   368 QRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPPVEAARELPAESTAAG------IRSSLPLN--- 423

  Fly   443 DMLNGPAPIYHSSAEYLPQE-----------FADVISLETSINQSFRSRCDSWLSGGSRRSFYYS 496
                  |..:|.    ||:|           |||.|||:.|:   :|...|||.|..|||:.|||
  Fly   424 ------AGEFHD----LPEEEEGEAVLDGEQFADAISLDRSV---YRQHADSWHSAMSRRTAYYS 475

  Fly   497 I-SESIYHSLADESEFAGLAAASLENRQQNYGPASELPDLNEPLSEDQGWLVEEGEFVMMHAVYQ 560
            : ..|:..:.:..|....:.||:.|..::  .|...:|.|..||....||:.|:|:|||:||.|.
  Fly   476 LGGPSMRSNRSRMSISQRIEAANAEFAER--VPTGTIPPLQMPLLSSDGWICEDGDFVMVHAAYT 538

  Fly   561 THLGIDCHFAPKAQLNDGTIYLILIRAGISRPHLLSFLYNMSSGTHLPESHDDHVKVLPVRAFRL 625
            |||..|..|||:::|:||.|||::||.|:||..||:|:.|:::|||||...|..:||:|.||||:
  Fly   539 THLSSDVFFAPESRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRAFRI 603

  Fly   626 EPYDNHGIITVDGERVEFGPLQAEVLPGIARVM 658
            ||..:.||:.|||||||:||:||||:||:..||
  Fly   604 EPSSSDGILVVDGERVEYGPIQAEVMPGLINVM 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sk2NP_647762.3 PLN02958 <213..639 CDD:215517 207/453 (46%)
DAGK_cat 216..354 CDD:279163 78/139 (56%)
Sk1NP_572717.1 PLN02958 <189..622 CDD:215517 212/456 (46%)
DAGK_cat 191..330 CDD:279163 78/138 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446751
Domainoid 1 1.000 108 1.000 Domainoid score I2150
eggNOG 1 0.900 - - E1_COG1597
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 200 1.000 Inparanoid score I1316
Isobase 1 0.950 - 0 Normalized mean entropy S4295
OMA 1 1.010 - - QHG47523
OrthoDB 1 1.010 - - D561206at33208
OrthoFinder 1 1.000 - - FOG0001465
OrthoInspector 1 1.000 - - mtm6496
orthoMCL 1 0.900 - - OOG6_101566
Panther 1 1.100 - - P PTHR12358
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R653
SonicParanoid 1 1.000 - - X918
1413.790

Return to query results.
Submit another query.