DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMC5 and jnj

DIOPT Version :9

Sequence 1:NP_996141.2 Gene:SMC5 / 326215 FlyBaseID:FBgn0052438 Length:1034 Species:Drosophila melanogaster
Sequence 2:NP_651228.1 Gene:jnj / 42876 FlyBaseID:FBgn0266282 Length:1122 Species:Drosophila melanogaster


Alignment Length:1119 Identity:241/1119 - (21%)
Similarity:466/1119 - (41%) Gaps:242/1119 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GRIHSVYCKDFVSYSE--ITFHPKHYLNVLTGPNGSGKSTIVSAIILGLGGEPILLDRSASVADY 76
            |::.|:...:|:.:|.  |.|.|.  :|.|.|.||||||.:::|:.|||.......:|::|:...
  Fly    97 GKVISMRLTNFMCHSNLFIEFGPN--INFLVGNNGSGKSAVITALALGLTSSARATNRASSIQKL 159

  Fly    77 IQSNKTSATIIVRV--YGRTPNTTETF-------RRIINSNGLSTFSVND---KDTSKK--NFLA 127
            |::.:.||||.:.:  .|..|...:.|       |:|.:|:  ||:.:.|   |..|||  :...
  Fly   160 IKNGEVSATISITLSNSGLRPFKADIFGPHLTVVRQIRHSS--STYDLQDARGKSVSKKVSDIRR 222

  Fly   128 AVSSFNIQVSNLCQFLPQDRVQDFSK-----MNPQELLLNTMSSVCDEDLINSFNSLKQMRTEQA 187
            .:..|.|.|.|....|.|:..::|.|     .|.:.|:..|...||...| ...::|::      
  Fly   223 MLLCFGINVENPIFVLNQEAAREFLKELEPASNYKLLMKATQLDVCTSSL-TECHALRR------ 280

  Fly   188 NVHANREKEKSDLVKKQKRLEHL---QMTVSQYKEREEVKQKLQVYSAKKLWVETQAGEAKAAEM 249
              |..:|.|:.: .||:..::|:   :..:|..:::|.||:.||....|..|:...:.:.:...:
  Fly   281 --HFTQELEQLE-KKKEMMIKHIAAEEEKLSILEDKEMVKENLQQCKTKLAWMAVTSYQNELNNL 342

  Fly   250 KTQVK---NAKTQSDKLKNQHDKLLQSQEQIEKEKESLRKALLEKTRLLENAV--AEKAAIDGKM 309
            :..:|   |.|...::..::.:....:..|..||.|:.:..:|...:..:..:  |:||..|..:
  Fly   343 EHSIKLIENKKASLEQTTSKKESTQATMNQKLKEFEASKNQILATQKFQDERLKTAKKAVQDLLL 407

  Fly   310 DSLKQGIYQKKYELEQNIKKSRRTATECDNLNQLVENKIYELETLNKSRPLIVSELERAKESCAA 374
            ::.:  :..|....|:.:::.:|:..||:   :|:.|...:...:|:.|....:::|..|:....
  Fly   408 EASQ--VKAKIGNAERRMREDQRSYDECE---KLIGNYHADFNRVNEQREENANKIEMLKKQVVK 467

  Fly   375 ARGKAMEQYSRRRQLEQKLNDEMIPEITAYKLKIERLRNVKMQKIDEIRAKNPNLVVAMNWLAQN 439
            :     |:...:.:.||:   |:..:||:.:.:::.::|.::|    :.....|:...:..|::|
  Fly   468 S-----EEIIAQLRAEQQ---EIKRDITSVQERLDAVKNGRIQ----LHKSKQNISWEIEALSRN 520

  Fly   440 KQRYKLNVYDPMILELTVQNHEDAKFLENVVAQRDLFA--------------FACEDKGDMSDLI 490
            |.. ||:||.    |.|:|         .|.|.|..:|              :.........|||
  Fly   521 KSN-KLSVYG----EQTIQ---------VVHALRTQYAGSNMHRMPRGPLGQYISAPNPKYRDLI 571

  Fly   491 -NEL--CV----------KQKL---------GVNV--IYCAPSDRLVY-------SPKTP----- 519
             |:|  |:          :|.|         |.|:  |..:|....||       .|.||     
  Fly   572 ENQLMHCLRSFIVGSDRERQSLRALLQNKFQGGNMPTIITSPFTDRVYDVSRNKVQPTTPNTTVL 636

  Fly   520 IDDLRSFG--FRSYLVDLVTGPIPLI--NKLCASY---SIHNIPIGTEAVGNYTSSIPKAIRVYF 577
            ||::....  ..:||:|::.....|:  :|..|.:   ...|:|      .|.|..:...:.:.:
  Fly   637 IDEISCDDPVVMNYLIDILRIETVLVTESKEIAEFLTSDTENVP------PNLTRVLVPNLGLEY 695

  Fly   578 GGSKKFVVTASRYRSDTILTESSIRAKNQLITVDSQQLALVMKQCSEAVKESDSIKNAITQTDNE 642
            ..|..:.|.::|      :|.:....||    ||.:...|.|:| |:..::..|::....|....
  Fly   696 IPSPNYAVYSTR------ITPARYIQKN----VDDRIRQLQMEQ-SDLQEKEPSLEIDYMQHKKV 749

  Fly   643 FERLQAVAKDEQEKRRKLDQKIAHFNSLKTEIETLQKKLEALRNSDSLDCLETNFCNSLHKDLKK 707
            .|..|.|          :.||.......::..:...:|:..|:|.|             :::|.:
  Fly   750 LENTQKV----------ISQKSTMIGQHQSRNQKAMQKIMELQNFD-------------YQELPE 791

  Fly   708 IFDADAELCSCLKAIDRLIIEKNMAQTKVSIYMLQH-ETQIEALKESEEQSKAATRDFQQLLQCL 771
            .....:.|....:.|::..:|:.|.|.|  :..:|| :|::|:   :|.:.:.|.....:.|..|
  Fly   792 YDRLKSHLADSGEKIEKCRLEREMLQEK--LLSIQHRQTELES---TEAEERRALEGINKKLTAL 851

  Fly   772 ENQISDVNKRKSAIQGLCHGEIPTSSKFPFKKEFR-------ELENIDLPELREA------IHDF 823
            :.:..:|..:..::.  .|.|..|..   |:|..:       |.|.: |.||.:|      :.:|
  Fly   852 DTEAGEVESKMRSLD--LHYEENTRR---FQKTLQLERKMLGEKETV-LSELEKARTEAEKLGEF 910

  Fly   824 QARLECMKSVNSEAISSYQGLQNEVKQLEEGIQESVN-QAKSIESGMSNLYDKWEPKLNSL--VE 885
            .|..:..:.:. ||||.|   ::::||:||     :| ..:.:|.|::.|.|:.|.:...|  |:
  Fly   911 IATTQTEEKIR-EAISRY---KSKIKQVEE-----LNYNPEELERGLAELRDELELQSRHLAVVD 966

  Fly   886 TISTKFSEFMESIEYVGEVVLSKTDKYDFDSYGIQIMVQFRRGLQLQPLDKFIQ----------- 939
            ::..|.     .:.|.....|.:..::   .|...:..||.:.|.::......:           
  Fly   967 SVVKKL-----RMAYHQRAQLFQRSRH---HYFTMVQFQFEQALAMRQFKVSFETSDKEKTWKIN 1023

  Fly   940 ---------------SGGERAVSIAIYSLSLQHVTHVPFRCVDEINQGMDATNERHIFDLLLKEA 989
                           |||||:.:.......|...:..||..:||.:...|..|.:.|.::|:.|.
  Fly  1024 VFPPSGNETSNTRSLSGGERSFTTVSLLKGLWSTSDHPFYFLDEYDVFTDEVNRKFITEILIGEG 1088

  Fly   990 TKHGSAQYLFVTPK 1003
            .:..|.||.|:||:
  Fly  1089 LEWLSRQYCFLTPQ 1102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC5NP_996141.2 ABC_SMC5_euk 14..>160 CDD:213244 49/166 (30%)
Smc 22..1011 CDD:224117 239/1111 (22%)
GrpE 212..>316 CDD:295646 20/108 (19%)
ABC_SMC5_euk <919..1025 CDD:213244 24/111 (22%)
jnjNP_651228.1 ABC_SMC6_euk 99..>248 CDD:213243 46/152 (30%)
Smc 115..1084 CDD:224117 229/1081 (21%)
TEX15 <269..>357 CDD:291972 19/97 (20%)
ABC_SMC6_euk <1027..1122 CDD:213243 21/76 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454090
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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