DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMC5 and Smc4

DIOPT Version :9

Sequence 1:NP_996141.2 Gene:SMC5 / 326215 FlyBaseID:FBgn0052438 Length:1034 Species:Drosophila melanogaster
Sequence 2:NP_001032262.2 Gene:Smc4 / 295107 RGDID:1306680 Length:1286 Species:Rattus norvegicus


Alignment Length:1280 Identity:269/1280 - (21%)
Similarity:464/1280 - (36%) Gaps:385/1280 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ALSSKQLAGR--IHSVYCKDFVSYS-EITFHPKH-YLNVLTGPNGSGKSTIVSAIILGLGGEPIL 66
            |::|:..|.|  |..:..::|.||: |....|.| ..:.:.||||||||.::.:::...|..   
  Rat    70 AMASEAGAPRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYR--- 131

  Fly    67 LDRSASVADYIQSNKTSATI------------IVRV------------YGRTPNTTETFRRIINS 107
                   |..|:|.|.|..|            .|.|            |...||:.....|....
  Rat   132 -------AQKIRSKKLSVLIHNSDEHTDIQSCTVEVHFQKIIDKEGDDYDVLPNSNFYVSRTAYR 189

  Fly   108 NGLSTFSVNDKDTSKKNFLAAVSSFNIQVSNLCQFLPQDRVQDFSKMNPQ--------------- 157
            :..|.:.::.|..:.|:....:.|..|.:.:....:.|..|:..:.|.|:               
  Rat   190 DNTSVYHISGKKRTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLED 254

  Fly   158 ------------------ELL-------LNTMSSVCDE--------------------------- 170
                              |:|       ||.:..|..|                           
  Rat   255 IIGCGRLNEPIKVLCRRVEILNEHRGEKLNRVKMVEKEKDALEGEKNIAIEFLTLENEIFKKKNH 319

  Fly   171 -------DLINSFNSLKQMR----------TEQANVHANREKEKSDLVKK-QKRLEHLQMTVSQY 217
                   ||.|....:|..:          ||::||.:|..|.|:..||. :|:|..:...:.|.
  Rat   320 ICQYYIYDLQNRIAEMKTQKEKIHEDTKEITEKSNVLSNEMKAKNSAVKDIEKKLNKVTKFIEQN 384

  Fly   218 KER--------EEVKQKLQ--VYSAKKLWVETQAGEAKAAEMKTQVKNAKTQSDKLKNQHDKLLQ 272
            ||:        .:|::||:  ...||||       |.:..:.|.:|:..|:...|.||..::...
  Rat   385 KEKFTQLDLEDVQVREKLKHATSKAKKL-------EKQLQKDKEKVEELKSIPAKSKNVINETTT 442

  Fly   273 SQEQIEKEKESLRKALLEKTRLLENAVAEKAAIDGKMDSLK---QGIYQKKYELEQNIKKSRRTA 334
            ....:|||:|...|.|.|                 .|||||   ||:.::|...|:.:....::.
  Rat   443 RNNSLEKEREKEEKKLKE-----------------VMDSLKQETQGLQKEKEIQEKELMGFNKSV 490

  Fly   335 TECDNLNQLVENK--IY------ELETLNKSRPLIVSELERAKESCAAARGKAMEQYSRRRQLEQ 391
            .|..:..::.:::  ||      .:..|:|::..:::..|..||..||.:....:....:::|::
  Rat   491 NEARSKMEVAQSELDIYLSRHNTAVSQLSKAKDALITASETLKERKAAIKDINTKLPQAQQELKE 555

  Fly   392 KLNDEMIPEITAYKLKIERLRNVKMQKIDEIRAKNPNLVVAMNWLAQNKQRYKLNVYDPMILELT 456
            |  ::.:.::|..::.::.|.:...||::|.::.          ||.|:.|.|       :|:..
  Rat   556 K--EKELQKLTQEEINLKSLVHDLFQKVEEAKSS----------LATNRSRGK-------VLDAI 601

  Fly   457 VQNHEDAKF---------LENVVAQRDLFAFACEDKGD--MSDLIN--ELCV----KQKLGVNVI 504
            :|..:..:.         |..:..:.|:...:|....|  :.|.|:  :.||    |..:|| ..
  Rat   602 IQEKKSGRIPGIYGRLGDLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHNIGV-AT 665

  Fly   505 YCAPSDRLVYSPK-----TPIDDLRSFGFRSYLVDLVTGPIPLINKLCASYSIHNIPIGTEAVGN 564
            :.......|::.|     ||.:..|.|       |||......|.:  |.|    ..:....|.|
  Rat   666 FIGLDKMAVWAQKMNKIQTPENTPRLF-------DLVKVKNEEIRQ--AFY----FALRDTLVAN 717

  Fly   565 YTSSIPKAIRVYF------------------------GGSKKFVVTASRYRSDTILTESSIRAKN 605
               ::.:|.||.:                        ||||   |...|..| :::.|.|:...|
  Rat   718 ---NLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMTGGGSK---VMRGRMGS-SVVDEISVEEVN 775

  Fly   606 QL---ITVDSQQLALVMKQCSEAVKESDSIKNAITQTDNEFERLQAVAK--DEQEKRRKLDQKIA 665
            ::   :...|:|.|.|.:|..:..:....:|.:..:..|..|:..|..:  .|||:...:..|..
  Rat   776 KMECQLERHSKQAAQVQEQKVQHEEAIVKLKQSEREMRNTLEKFTASIQGLSEQEEYLCVQIKEL 840

  Fly   666 HFNSLKTEIETLQKKLEALRNSDSLDCLETNFCNSLHKDLKKIFDADAELCSCLKA-IDRL---I 726
            ..|.|.|..:..|:||           ||.|.     ...||.:||.||....::| |.||   |
  Rat   841 EANVLTTAPDKKQQKL-----------LEENV-----NVFKKEYDAVAEKAGKVEAEIKRLHDTI 889

  Fly   727 IEKN-----MAQTKVSIYMLQHETQIEALKESEEQSKAATRDFQQLLQCL---ENQISD----VN 779
            |:.|     ..|.|:.....|.:....|:.:::...|.|.|:.::....:   |.:|.|    :|
  Rat   890 IDINNRKLKAQQNKLDTINKQLDECASAITKAQVAIKTADRNLKKAQDSVCRTEKEIKDTEKEIN 954

  Fly   780 KRKSAIQGLCHG--EIPTSSK-----FP-FKKEFR-------------------------ELENI 811
            ..|:.::.:...  |:..::|     .| .:||.|                         :||.|
  Rat   955 DLKTELKNIEDNAEEVIKNTKDAEKSLPEIQKEHRALLQELKVIQDNEHALQKDALSIKLKLEQI 1019

  Fly   812 D--LPELREAIHDFQARLECMK------------SVNS----EAISSYQGLQNEV---------- 848
            |  :.|....|..:|..:..:|            ||.|    |||.|...:.|::          
  Rat  1020 DGHISEHNSKIKYWQKEISKIKLHPVEDNPVETVSVLSQEDLEAIKSPDSITNQIALLEAQCREM 1084

  Fly   849 ----------KQLEEGIQESVNQAKSIESGMSNLYDKWE----PKLNSLVE---TISTKFSEFME 896
                      |:.||...:.|.:...|.|...|....:|    .:||..:.   .|:.|..|..:
  Rat  1085 KPNLGAIAEYKKKEELYLQRVGELDKITSERDNFRQAYEDLRKQRLNEFMAGFYVITNKLKENYQ 1149

  Fly   897 SIEYVGEVVLSKTDKYDFDSYGIQIMVQFRRGLQLQPLDK-----FIQSGGERAVSIAIYSLSLQ 956
            .:...|:..|...|..|..|.||...|        :|..|     |..||||:.:|......:|.
  Rat  1150 MLTLGGDAELELVDSLDPFSEGIMFSV--------RPPKKSWKKIFNLSGGEKTLSSLALVFALH 1206

  Fly   957 HVTHVPFRCVDEINQGMDATNERHIFDLLLKEATKHGSAQYLFVT 1001
            |....|...:|||:..:|..|. .|....:.|.||  :||::.::
  Rat  1207 HYKPTPLYFMDEIDAALDFKNV-SIVAFYIYEQTK--NAQFIIIS 1248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC5NP_996141.2 ABC_SMC5_euk 14..>160 CDD:213244 39/206 (19%)
Smc 22..1011 CDD:224117 264/1262 (21%)
GrpE 212..>316 CDD:295646 30/116 (26%)
ABC_SMC5_euk <919..1025 CDD:213244 24/88 (27%)
Smc4NP_001032262.2 ABC_SMC4_euk 80..>239 CDD:213241 36/168 (21%)
SMC_N 81..1272 CDD:280601 265/1269 (21%)
BAR <335..>414 CDD:299863 22/85 (26%)
SMC_hinge 611..725 CDD:214944 26/130 (20%)
ABC_SMC4_euk <1179..1273 CDD:213241 21/73 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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