Sequence 1: | NP_996141.2 | Gene: | SMC5 / 326215 | FlyBaseID: | FBgn0052438 | Length: | 1034 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001032262.2 | Gene: | Smc4 / 295107 | RGDID: | 1306680 | Length: | 1286 | Species: | Rattus norvegicus |
Alignment Length: | 1280 | Identity: | 269/1280 - (21%) |
---|---|---|---|
Similarity: | 464/1280 - (36%) | Gaps: | 385/1280 - (30%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 ALSSKQLAGR--IHSVYCKDFVSYS-EITFHPKH-YLNVLTGPNGSGKSTIVSAIILGLGGEPIL 66
Fly 67 LDRSASVADYIQSNKTSATI------------IVRV------------YGRTPNTTETFRRIINS 107
Fly 108 NGLSTFSVNDKDTSKKNFLAAVSSFNIQVSNLCQFLPQDRVQDFSKMNPQ--------------- 157
Fly 158 ------------------ELL-------LNTMSSVCDE--------------------------- 170
Fly 171 -------DLINSFNSLKQMR----------TEQANVHANREKEKSDLVKK-QKRLEHLQMTVSQY 217
Fly 218 KER--------EEVKQKLQ--VYSAKKLWVETQAGEAKAAEMKTQVKNAKTQSDKLKNQHDKLLQ 272
Fly 273 SQEQIEKEKESLRKALLEKTRLLENAVAEKAAIDGKMDSLK---QGIYQKKYELEQNIKKSRRTA 334
Fly 335 TECDNLNQLVENK--IY------ELETLNKSRPLIVSELERAKESCAAARGKAMEQYSRRRQLEQ 391
Fly 392 KLNDEMIPEITAYKLKIERLRNVKMQKIDEIRAKNPNLVVAMNWLAQNKQRYKLNVYDPMILELT 456
Fly 457 VQNHEDAKF---------LENVVAQRDLFAFACEDKGD--MSDLIN--ELCV----KQKLGVNVI 504
Fly 505 YCAPSDRLVYSPK-----TPIDDLRSFGFRSYLVDLVTGPIPLINKLCASYSIHNIPIGTEAVGN 564
Fly 565 YTSSIPKAIRVYF------------------------GGSKKFVVTASRYRSDTILTESSIRAKN 605
Fly 606 QL---ITVDSQQLALVMKQCSEAVKESDSIKNAITQTDNEFERLQAVAK--DEQEKRRKLDQKIA 665
Fly 666 HFNSLKTEIETLQKKLEALRNSDSLDCLETNFCNSLHKDLKKIFDADAELCSCLKA-IDRL---I 726
Fly 727 IEKN-----MAQTKVSIYMLQHETQIEALKESEEQSKAATRDFQQLLQCL---ENQISD----VN 779
Fly 780 KRKSAIQGLCHG--EIPTSSK-----FP-FKKEFR-------------------------ELENI 811
Fly 812 D--LPELREAIHDFQARLECMK------------SVNS----EAISSYQGLQNEV---------- 848
Fly 849 ----------KQLEEGIQESVNQAKSIESGMSNLYDKWE----PKLNSLVE---TISTKFSEFME 896
Fly 897 SIEYVGEVVLSKTDKYDFDSYGIQIMVQFRRGLQLQPLDK-----FIQSGGERAVSIAIYSLSLQ 956
Fly 957 HVTHVPFRCVDEINQGMDATNERHIFDLLLKEATKHGSAQYLFVT 1001 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SMC5 | NP_996141.2 | ABC_SMC5_euk | 14..>160 | CDD:213244 | 39/206 (19%) |
Smc | 22..1011 | CDD:224117 | 264/1262 (21%) | ||
GrpE | 212..>316 | CDD:295646 | 30/116 (26%) | ||
ABC_SMC5_euk | <919..1025 | CDD:213244 | 24/88 (27%) | ||
Smc4 | NP_001032262.2 | ABC_SMC4_euk | 80..>239 | CDD:213241 | 36/168 (21%) |
SMC_N | 81..1272 | CDD:280601 | 265/1269 (21%) | ||
BAR | <335..>414 | CDD:299863 | 22/85 (26%) | ||
SMC_hinge | 611..725 | CDD:214944 | 26/130 (20%) | ||
ABC_SMC4_euk | <1179..1273 | CDD:213241 | 21/73 (29%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG1196 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |