DRSC/TRiP Functional Genomics Resources

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Protein Alignment SMC5 and smcl-1

DIOPT Version :9

Sequence 1:NP_996141.2 Gene:SMC5 / 326215 FlyBaseID:FBgn0052438 Length:1034 Species:Drosophila melanogaster
Sequence 2:NP_509956.2 Gene:smcl-1 / 183453 WormBaseID:WBGene00008085 Length:537 Species:Caenorhabditis elegans


Alignment Length:400 Identity:83/400 - (20%)
Similarity:158/400 - (39%) Gaps:101/400 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 RIHSVYCKDFVSYS-EITFHPKHYLNVLTGPNGSGKSTIVSAIILGLGGEPILLDRSASVADYIQ 78
            |:.:|...:|..|. ..:|.|..::....|.||.|||.::.||....|.:  |.|......:::.
 Worm     7 RLLTVDILNFKCYQHHKSFGPFDHVTTFIGMNGCGKSIMIEAIAFVFGED--LPDPKNPHNEHLF 69

  Fly    79 SNKTSATIIVRVYGRTPNTTETFRRIINSNGLS---TFSVNDKDTSKKNFLAAVSSFNIQVSNLC 140
            .:.....::...:.....:|:.|.||    ||.   |:.:.:|..:::.:|..:...|.:.:.  
 Worm    70 YDYNIRCVVSLKFEMPDGSTKRFTRI----GLKTTYTYMIFNKYVTEEEYLLELGKMNFRFAG-- 128

  Fly   141 QFLPQDRVQDFSKMNPQELLLNTMSSVCDEDLINSF----NSLKQMRTEQANVHANREKEKSDLV 201
                    |:.|..|...|.:...|:   |:|...|    ||: :.:.|...:.|.....:|.::
 Worm   129 --------QNISVYNKTTLKVTRKSA---EELGAFFDIVSNSI-EFKPEYDELKAKLNFAESTVL 181

  Fly   202 KKQKRLEHLQM------TVSQY------KEREEVKQKLQVYSAKKLWVETQAGEAKAAEMKTQV- 253
            :..|.::.:::      |::.|      ||.:|.|:|   :.|::|.|     .||.|:|..:: 
 Worm   182 RWAKMIDSIELEKEKFITLTLYKLYLCDKEIQETKEK---FVAEQLKV-----NAKNAKMPLRIS 238

  Fly   254 ----------------KNAKTQSDKLKNQHDKLLQSQEQIEKEKESLRKALLEKTRLLENAVAE- 301
                            .||.....|..|.:|.|:    .::|....|.:.:.|:..||:.||.. 
 Worm   239 RYSEAIPKQTPSPNFKNNAIVVRPKTHNHYDNLI----TVDKLNSYLNEKVTERRELLQFAVNHP 299

  Fly   302 ----KAAIDG------KMDSLKQGIYQKK---------YE---LEQNIKKSR---------RTAT 335
                :.:.:|      ::|..:...|.||         |:   ||:.|||.|         :...
 Worm   300 NMNIRFSEEGPNIYAREIDYTELPEYYKKESDDIIATSYKRSMLEKEIKKIRQCWLDENNIKDDA 364

  Fly   336 ECDNLNQLVE 345
            ..||:|..::
 Worm   365 NIDNINMRIK 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMC5NP_996141.2 ABC_SMC5_euk 14..>160 CDD:213244 30/148 (20%)
Smc 22..1011 CDD:224117 81/392 (21%)
GrpE 212..>316 CDD:295646 29/143 (20%)
ABC_SMC5_euk <919..1025 CDD:213244
smcl-1NP_509956.2 ABC_ATPase 8..>123 CDD:330224 25/120 (21%)
SMC_N <112..520 CDD:330553 58/288 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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