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Protein Alignment CG32379 and Cpa1

DIOPT Version :9

Sequence 1:	NP_729252.2	Gene:	CG32379 / 326211	FlyBaseID:	FBgn0052379	Length:	344	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	360	Identity:	105/360 - (29%)
Similarity:	180/360 - (50%)	Gaps:	47/360 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 YH-LEYKVLIEDLAPLVHAQRAENLRKKLLIQWPHIDVLSAF---------------YTHSEIND 52
            || :.|:::|||:..|:..::.:               :|||               :|..||.:
  Rat    81 YHGISYEIMIEDVQLLLDEEKQQ---------------MSAFQARALSTDSFNYATYHTLDEIYE 130

  Fly    53 YLDSLLERFPKRVQVKQFGWSYERRPLKVLTITNGDGRRNKPVILIDGTVHAREWISPSMALYII 117
            ::|.|:...|:.|...|.|.::|.||:.||..:.|.  .|:|.|.||..:|:|||::.:..::..
  Rat   131 FMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGG--TNRPAIWIDTGIHSREWVTQASGVWFA 193

  Fly   118 QQLLDNYGDN---QELLQDYDWVIMPVVNADGYEYTHTDSRYWRKSRRPTSNPECIGTDINRNFG 179
            :::..:||.:   ..:|.:.|..:..|.|.||:.|||..:|.|||:|..|....|:|.|.|||:.
  Rat   194 KKITKDYGQDPTFTAVLDNMDIFLEIVTNPDGFAYTHKTNRMWRKTRSHTQGSLCVGVDPNRNWD 258

  Fly   180 YEWGHDEGSSSDPCENIYRGERPFDQSESQVLRDVMLHYKGRLNFYLSLHSYGNYFLLPWGYTSD 244
            ..:|. .|:||:||...|||:.|..:.|.:.:.|.:..: |.:..::|:|||....|.|:||||:
  Rat   259 AGFGM-AGASSNPCSETYRGKFPNSEVEVKSIVDFVTSH-GNIKAFISIHSYSQLLLYPYGYTSE 321

  Fly   245 -FPDTYQ-DMMSVADAGAKAIIYSTNGIYSYGSTYYVLYPTSGDTTDFAF--GVVNATVAMTMEL 305
             .||..: |.::.:...|...::.|.  :.|||....:|..||.|.|:.:  |:   ..:.|.||
  Rat   322 PAPDQAELDQLAKSAVTALTSLHGTK--FKYGSIIDTIYQASGSTIDWTYSQGI---KYSFTFEL 381

  Fly   306 PAAGFQGFDPWISQIERLVTESWVGVRAMAAEVIR 340
            ...|.:||....|||.....|:|:.:..:....::
  Rat   382 RDTGLRGFLLPASQIIPTAEETWLALLTIMDHTVK 416

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.