DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32344 and RRP3

DIOPT Version :10

Sequence 1:NP_612028.4 Gene:CG32344 / 326208 FlyBaseID:FBgn0052344 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_011932.2 Gene:RRP3 / 856462 SGDID:S000001107 Length:501 Species:Saccharomyces cerevisiae


Alignment Length:471 Identity:159/471 - (33%)
Similarity:239/471 - (50%) Gaps:33/471 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 RKK--QADEIPGFPSLDNDAGTSDRGADILKSKSKK---------NKSGGFQS---MGLGFELIK 52
            :||  :|::..|..|...:..|::: ..:||||||.         |:...|:|   :.|..|||:
Yeast    31 QKKLIEAEKEGGSESDSEEDATAEK-KKVLKSKSKSTVSTQNENTNEDESFESFSELNLVPELIQ 94

  Fly    53 GITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL-QRREPTKGARALILS 116
            ......|..|||||.|.||..|||.|::.:|:|||||||.|.||:..:| ..:||   ..|.||:
Yeast    95 ACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEP---YYACILA 156

  Fly   117 PTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFL-HLCVEMDLK 180
            ||||||.|..:....||..|.::|..::||.:|..|...:...|.:|:|||||.: ||.......
Yeast   157 PTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFS 221

  Fly   181 LNSIEYVVFDEADRLFEMGFGEQLNETLHRLPS-SRQTVMFSATLPKLLVEFARAGLNDPVLIRL 244
            |..::::|.||||||.:|.||..|:..|..:|: .|.|.:||||:...:.:..||.|.:||...:
Yeast   222 LRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAV 286

  Fly   245 DVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTVVFAGTQHHVELISYILTEAGISNA 309
            ..:.:..|.|....:......:.|.|:.||...|  ....::|..|:.:.|.:|.:......|..
Yeast   287 SNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI--GKTMIIFTRTKANAERLSGLCNLLEFSAT 349

  Fly   310 SVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCAR 374
            :::..|:...|..:...|...|.|:|:.|||||||:||||:|.|||...|...|.::|||||.||
Yeast   350 ALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTAR 414

  Fly   375 AGRTGTAYSIVSTDDTAHLLDLHLFLNR--PFNIHDSSALGTIPQD--------LLEEEHLTVTD 429
            |||:|.:.|:||..|...:|.:...|.:  |....|.:.:.|:...        ::|........
Yeast   415 AGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEK 479

  Fly   430 IKKSHHIAGVLRTSEN 445
            |.:.....|.:.|.||
Yeast   480 IARGKGRRGRMMTREN 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32344NP_612028.4 DEADc_DDX54 39..243 CDD:350717 85/209 (41%)
SrmB 41..449 CDD:440279 146/421 (35%)
DBP10CT <679..721 CDD:462373
RRP3NP_011932.2 SrmB 82..489 CDD:440279 141/411 (34%)
Blue background indicates that the domain is not in the aligned region.

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