DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Claspin and Clspn

DIOPT Version :9

Sequence 1:NP_001286934.1 Gene:Claspin / 326205 FlyBaseID:FBgn0052251 Length:1465 Species:Drosophila melanogaster
Sequence 2:NP_001382011.1 Gene:Clspn / 298534 RGDID:1309083 Length:1315 Species:Rattus norvegicus


Alignment Length:1472 Identity:317/1472 - (21%)
Similarity:568/1472 - (38%) Gaps:389/1472 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 SQVNQEDQEKPVKSNKTKKAVKNKTQANK--AEDDQDNP---SKEDKPKKVVKNKKQTNKDGKPQ 201
            |:||.|..:..:.|.:...:.:...:|.:  :|.|.|..   ||:.|.:||:::.....:|..| 
  Rat     7 SEVNLEVGDLKILSQEEVDSGQGSFEALELFSERDSDEEIFVSKKPKSRKVLQDSDSEAEDNAP- 70

  Fly   202 TNEEYDHHQQHEKPAKTQKSKKLAKKQKQQEDDKEDNGTEQEKKKPSPKSKAKKSDKSKIDSLMD 266
                       |||.                   .|:..|..:...|.||:..||..:   :|.|
  Rat    71 -----------EKPT-------------------YDSAEENNENLHSGKSQTIKSIST---ALAD 102

  Fly   267 NEEDAGEDLKMYQEDQEPQK-------QKTKKSAKKTNKDSKEESGEDQEHQEQKKPLKKIKLDN 324
            ::|.:.|.... ||..|.|:       .:|..||..|. |.|......:|..|.|...|: :|: 
  Rat   103 SDESSMEGTPC-QESLETQETPSLELSHQTASSADFTT-DRKLSKALRREGTEGKAKSKR-RLE- 163

  Fly   325 IDTKEDKEQIVKPKKMAKKNKQKVLSDDESEENQNEKVDQDHDLKKMSSENELEMGSDKEDQEMQ 389
               ||::.: .|.:::.||..:...||.:...|.:..:.:|.||        .|.|.::||    
  Rat   164 ---KEERTR-EKIRRLKKKETRCEESDADRPLNDSGCLLEDSDL--------FETGLEEED---- 212

  Fly   390 EPPKKAKKNKQRMDSESEDEIPKTESEKITSSPKNKLKGLVDSESEPEETAEEV-SPVKNKLKGL 453
                                                     ||..|.||:.|.: :.||||:|. 
  Rat   213 -----------------------------------------DSPLEDEESLESIRAAVKNKMKN- 235

  Fly   454 VDSESEPELDNPEESAGEQEAPMESALSREKPKKAKVVRESAKKALEGMQAIQSEQQRLHREAHI 518
             ..:.||.|:: |..:.|.|:.:.....|::.|.||:.:|:.||       :.||.|||.||:.:
  Rat   236 -HKKKEPSLES-ETFSLEDESELSKGSGRKERKAAKLSKEALKK-------LHSETQRLVRESAL 291

  Fly   519 NVPYHQPKPRTLKEFLSRRTINAPLATALA--------GGSPMPSRQPRKSVGLRMTREELEAYA 575
            |:|||.|:.:|:.:|..|:...:...:|:|        .|....:..|..:.|:........:..
  Rat   292 NLPYHMPESKTIHDFFKRKPRPSCQGSAMALLKSCKYQSGHHKEAINPADAAGMSADDPSKGSEQ 356

  Fly   576 KLMEDRAKEAT---EFFKSESESDEEDDSENEEP-----MELKDNPGVMDEMLDNPKTPEQPKND 632
            :...:.|||.|   |..:....:...|::..::|     :|:::.....|   ..|...::..:.
  Rat   357 RTRAESAKETTILPEVSEEAGITAGSDEACGKDPVRGAELEIEETEKYSD---GRPSPGDRSVSQ 418

  Fly   633 TEDMTSQAVIEVPVLGEDKTDDTVGDEAMVADSITEEEPIASTSTAAALKLADNFEIQQETNAKS 697
            .|...|::        :|..:...|:.........|.|.:.:|..|.|.:.|    .:|:|.:. 
  Rat   419 QESSISRS--------KDSENCHTGELTQSDPPALEGEELKTTEEAEAGEGA----AEQKTESA- 470

  Fly   698 PSKVCLVTEVVELPKLDLSTINITPSSKPATPKISEVIRQLKIEKSLDESPSLKGDPNMVIDLET 762
                                  :.|..|.....:.. :|||.::.|  ..|.|..|.:..:.|:.
  Rat   471 ----------------------VAPPGKARRFTVDR-LRQLGVDVS--SQPRLGADEDSFVILDE 510

  Fly   763 GDMFAKKPTGVDDLLNRLMK----TREAKKHKTTETVNILTTEHG-------KLEMSKVSIHLHE 816
            .:...:    ::.|..|..:    ....:.|:|. .|||:..:.|       |.|:..|::...:
  Rat   511 PETNRE----LEALKQRFWRHANPAASPRAHQTL-NVNIIVKDLGTDGKEELKAEVVPVTLAAEK 570

  Fly   817 EEIAKEPKPGAGYMKMQEHLKTLITKKRMEDLRKKQA-------------EEQEKMAEDEEEGMD 868
            .|.|...|||.....::..|:..:..:|:|:.:|:||             ||:|:|.::.||..:
  Rat   571 LEGASHTKPGEKLQMLKAKLQEAMKLRRLEERQKRQALFKLDNEDGFEEEEEEEEMTDESEEDGE 635

  Fly   869 VDEEYEPEDKPGYAEVTINEDEEIIDKVDSTAEDDGDAEENKND--ADEDPEDNPVEDSEDEKND 931
            .:||.|.|::         |:||:           ||.:|....  ..||.|....::::.|..|
  Rat   636 EEEEEEEEEE---------EEEEV-----------GDMQETSEYLLGSEDTETKAEKETDKENTD 680

  Fly   932 SESE---QECEANPEP--------------------ETQTRKKNRIIKAFEDDNSDEDDLDLLQT 973
            :.|:   ....:.|:|                    .|:.:.:.......:.|..||||...|.|
  Rat   681 ASSDVGKPVALSVPKPLSSDSTLLLFKDTSSKMGYFPTEEKSETDEHMGKQSDKLDEDDSSSLLT 745

  Fly   974 ----------------------------------------PKP-----SNVAPITATQLQLSAHK 993
                                                    |.|     |.::..:.:..:||...
  Rat   746 KESSHNSSFELIGSTIPSYQPCNRHTGRGTSFLPTAGFRSPSPGLFRGSLISSASKSSGKLSEPS 810

  Fly   994 L--FDVETRRTASDEENELLDLCSGQF-------PQTQMLSSDA-------PSVDTAVISQIPMT 1042
            |  .|.:...|||.|...|. |.:|.|       .|:|:|.:|.       .:...|:..|:|:.
  Rat   811 LPIEDSQDLYTASPEPKTLF-LGAGDFQFCLEDDTQSQLLDADGFLNVRNHRNRYQALKPQLPLA 874

  Fly  1043 QFGGSSQAA--DELEGLCSGTFATQLPSQAPTQQPEQQEESE---------VPAAVANRIVSSDE 1096
            ....::..|  |||..||:|.|.:|...:...::.:|:|..|         .|:..|:.:...:.
  Rat   875 SMDENAMDANMDELLDLCTGQFTSQSEEKCQPRKNDQKENMEELLNLCSGKFPSQDASPVAPLEL 939

  Fly  1097 EAQEDALEVDKPRNKKLTKKRPKKKAKLGFSDDEDSDDEVEEF--------------DEESDAEP 1147
            ..:|.....:.|..:.|.      .....|..|.:.:.|.|||              ||...::.
  Rat   940 RTEERESGTEDPMEEALA------LCSGSFPTDREEEGEEEEFGDFQLVSKENEFASDEGGHSDS 998

  Fly  1148 VEEIPETFVDYDSEENEIVVEMTKKDRKIRAANFVDKEAELSESEWGSADE-DEKNMDEYDIELG 1211
            .:|  |..:|.:.:|.|::.:..|..|::|...:::.|||:|.|:.||.|| |.:::|||:.:..
  Rat   999 SDE--ELALDLEDDEEELLKQSEKMKRQMRLKKYLEDEAEVSGSDVGSEDEYDGEDIDEYEEDAI 1061

  Fly  1212 DEDQFDRDKLRHELGQIHARKMMDQDIREVRKIKELLFEE---EEEGANRQRQFRWKNVEAGFSL 1273
            ||.....::|..::.:||.:.|:|.|.|.:|..:|....:   ..:|..|.|:||||:::....:
  Rat  1062 DEVLPSDEELESQIKKIHMKTMLDDDKRRLRLYQERYLADGDLHSDGPGRTRKFRWKHIDDTSQM 1126

  Fly  1274 DDNRTDNGEGNDGSGDEENEHLWRKIRYEREQLLLEKGLKPEVASPLSTSVINTSNNGNSPAIRR 1338
            |....|:.:.......:|.|..|||.|.||||.|.|:..:.::|:       ...:.|..   .:
  Rat  1127 DLFHRDSDDDQVEEQLDETEAKWRKERIEREQWLREQAQQGKIAA-------EEEDVGED---SQ 1181

  Fly  1339 LNIISSKKTTVEVKKNSPFLISKTIAGKQQKSAV----------------RGSFLIRDQQTLSKL 1387
            ..:::.|.|...::||:    |:.:|.::.||.:                .||.|.:.:..|.||
  Rat  1182 FMMLAKKVTAKALQKNA----SRAVAVQESKSVLSNPFETIRAGGAHQLKTGSLLNQPKAVLQKL 1242

  Fly  1388 AGLTKGTSGDVDAAEGTISVKSAKAKNFVFATLTEEEHENRK 1429
            |     |..|::.:      ....::||||.||:..:.|..|
  Rat  1243 A-----TLSDLNPS------APRNSRNFVFHTLSPTKAETAK 1273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClaspinNP_001286934.1 infB 58..>180 CDD:177089 9/42 (21%)
2A1904 <96..411 CDD:273344 60/280 (21%)
MDN1 <861..947 CDD:227596 20/110 (18%)
ClspnNP_001382011.1 PTZ00108 <15..222 CDD:240271 61/301 (20%)
PTZ00341 <1043..>1178 CDD:173534 41/141 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166346117
Domainoid 1 1.000 184 1.000 Domainoid score I3318
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 185 1.000 Inparanoid score I3852
OMA 1 1.010 - - QHG47598
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007571
OrthoInspector 1 1.000 - - oto98788
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14396
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X7601
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.090

Return to query results.
Submit another query.