DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32202 and Hmg20a

DIOPT Version :9

Sequence 1:NP_730354.2 Gene:CG32202 / 326199 FlyBaseID:FBgn0052202 Length:141 Species:Drosophila melanogaster
Sequence 2:XP_006243179.1 Gene:Hmg20a / 315689 RGDID:1564760 Length:350 Species:Rattus norvegicus


Alignment Length:77 Identity:20/77 - (25%)
Similarity:30/77 - (38%) Gaps:18/77 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 PKGKTEQKRRG--PKPKNKQAADETGAPGSEPGPNTPAAR---KPRKQKAKQAPINPNPVIA--- 129
            |:.:...||.|  ...|.|:...::.||.|   |.|...|   :.|:|...:.|..|.|.|.   
  Rat    79 PEDEQRSKRGGWSKGRKRKKPLRDSNAPKS---PLTGYVRFMNERREQLRAKRPEVPFPEITRML 140

  Fly   130 -------PPHQQ 134
                   ||.::
  Rat   141 GNEWSKLPPEEK 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32202NP_730354.2 None
Hmg20aXP_006243179.1 HMGB-UBF_HMG-box 106..171 CDD:238686 13/50 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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