DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32202 and Hmg20b

DIOPT Version :9

Sequence 1:NP_730354.2 Gene:CG32202 / 326199 FlyBaseID:FBgn0052202 Length:141 Species:Drosophila melanogaster
Sequence 2:XP_006513311.1 Gene:Hmg20b / 15353 MGIID:1341190 Length:415 Species:Mus musculus


Alignment Length:125 Identity:30/125 - (24%)
Similarity:52/125 - (41%) Gaps:24/125 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KLYDRCQRIQAENERCVMRVNGIKKIVRRRNHDVELLKRRLDKHGDDWRSVPMEAPHPKGKTEQ- 79
            :|:...:|..|::||.:.||   |:|:.||....:||.:.:.......||..:.:|.|.....| 
Mouse   286 RLHGAIERDPAQHERLIARV---KEILARRAPVTDLLDQEMPLPTRPERSYTLGSPGPPQMKSQP 347

  Fly    80 -----------KRRGPKPKNKQAADETGAPGSEPGP---NTP------AARKPRKQKAKQ 119
                       :|.|..|.::..:..:|:...||.|   :||      :.|.|.:....|
Mouse   348 HPFSFEPHPRLQRPGDLPASQGGSHYSGSGTEEPRPLDSDTPPPPLVLSRRTPGRSPYSQ 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32202NP_730354.2 None
Hmg20bXP_006513311.1 HMGB-UBF_HMG-box 70..134 CDD:238686
OmpH 190..>254 CDD:214922
FAM222A <314..>400 CDD:373691 17/85 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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