DRSC/TRiP Functional Genomics Resources

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Protein Alignment Krn and tmeff2b

DIOPT Version :9

Sequence 1:NP_524129.1 Gene:Krn / 326198 FlyBaseID:FBgn0052179 Length:217 Species:Drosophila melanogaster
Sequence 2:XP_005165802.1 Gene:tmeff2b / 797681 ZFINID:ZDB-GENE-101001-4 Length:358 Species:Danio rerio


Alignment Length:104 Identity:27/104 - (25%)
Similarity:47/104 - (45%) Gaps:25/104 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 CPPTYVAWYCLNDGTCFTVKIHNEILY-------NCECALGFMGPRCEYKEIDGSY-LPTRNR-- 116
            ||..|.. ||          :|.|..|       .|.|..||:||:|:.|:.:..| :|...:  
Zfish   249 CPERYKD-YC----------VHGECEYPSNLSPPTCSCHSGFIGPQCDRKDYNVMYVVPGSGKLR 302

  Fly   117 -VMLEKASIVSGATLALLFMAMCCVVLYL-RHEKLQKQK 153
             |::  |||:....:|::.:.:.|:.... |..::.:||
Zfish   303 YVLI--ASIIGALQVAIICLVVLCITRRCPRGNRIARQK 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KrnNP_524129.1 None
tmeff2bXP_005165802.1 KAZAL 91..136 CDD:197624
KAZAL 185..231 CDD:197624
PHA02887 <245..285 CDD:333467 14/46 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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