DRSC/TRiP Functional Genomics Resources

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Protein Alignment Krn and Tmeff1

DIOPT Version :9

Sequence 1:NP_524129.1 Gene:Krn / 326198 FlyBaseID:FBgn0052179 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_001343201.1 Gene:Tmeff1 / 230157 MGIID:1926810 Length:373 Species:Mus musculus


Alignment Length:114 Identity:28/114 - (24%)
Similarity:51/114 - (44%) Gaps:23/114 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 CPPTYVAWYCLNDGTCFTVKIHNEILY-----NCECALGFMGPRCEYKEIDGSY-LPTRNR---V 117
            ||.. :..||:: |.|       |.:|     :|.|..|:.|..||..:....| :|:|.:   |
Mouse   268 CPEN-LNGYCIH-GKC-------EFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQKLTHV 323

  Fly   118 MLEKASIVSGATLALLFMAMCCVVLYL---RHEKLQKQKLHDSTTTTTT 163
            ::  |:|:....:|::...:.|:....   ...:.|||.|...|:.|::
Mouse   324 LI--AAIIGAVQIAIIVAIVMCITRKCPKNNRGRRQKQNLGHFTSDTSS 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KrnNP_524129.1 None
Tmeff1NP_001343201.1 KAZAL 91..135 CDD:197624
KAZAL 182..228 CDD:197624
PHA02887 <268..304 CDD:333467 12/44 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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