DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Krn and lin-3

DIOPT Version :9

Sequence 1:NP_524129.1 Gene:Krn / 326198 FlyBaseID:FBgn0052179 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_001367187.1 Gene:lin-3 / 178001 WormBaseID:WBGene00002992 Length:477 Species:Caenorhabditis elegans


Alignment Length:122 Identity:29/122 - (23%)
Similarity:45/122 - (36%) Gaps:30/122 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 YCLNDGTCFTVKIHNE-----ILYNCECALGFMGPRCEYKEIDGSYLPTRNRVMLEKASIVSGAT 129
            ||.::.||....|..|     ::.:|.|..|:.|.||:...:...|.|...|..:..:::.|.|.
 Worm   155 YCHHNATCHVEVIFREDRVSAVVPSCHCPQGWEGTRCDRHYVQAFYAPINGRYNVRLSTMSSTAQ 219

  Fly   130 L--------ALLFMAMCCVVLYLRHEKLQKQKLHDSTTTTTTDGGCQNEGMDEVDGL 178
            |        .|:||.         |        |.:.|.:||.....:|......||
 Worm   220 LLVQGKTKKPLIFMV---------H--------HPNQTISTTPSSQDSEISSIFSGL 259



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_116631
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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