Sequence 1: | NP_001259619.1 | Gene: | para / 32619 | FlyBaseID: | FBgn0285944 | Length: | 2145 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_110502.2 | Gene: | Scn1a / 81574 | RGDID: | 69364 | Length: | 2009 | Species: | Rattus norvegicus |
Alignment Length: | 2085 | Identity: | 943/2085 - (45%) |
---|---|---|---|
Similarity: | 1291/2085 - (61%) | Gaps: | 268/2085 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 FRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLE 80
Fly 81 QGVPIPVRLQGSFPPELASTPLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRV 145
Fly 146 AIYILVHPLFSLFIITTILVNCILMIMPTTPT-VESTEVIFTGIYTFESAVKVMARGFILCPFTY 209
Fly 210 LRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDV 274
Fly 275 IILTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSW--------------GNLTDE-----NWD 320
Fly 321 YHNRNSSNWYSEDEGISFPLCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLM 385
Fly 386 TQDFWEDLYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEA- 449
Fly 450 ----------IREAEEAAAAKAAKLEERANAQAQAAADAA---------AAEEAALHPEMAKSPT 495
Fly 496 YSCISYELFVGGEKGNDD---NNKEKMSIR----SVEVESESVSVIQRQPAPTTAHQATKVRKVS 553
Fly 554 TTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTP 618
Fly 619 MSE-ENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRN 682
Fly 683 QSVGATNGGTTCLDTNHKLDHRDYEIGLECTDEAGKIKHH---DNPFIEPVQTQTVVDMK----- 739
Fly 740 DVMVLNDIIEQAAGRHSRASDRGVSVYYFPT---EDDDEDGPTFKDKALEVILKGIDVFCVWDCC 801
Fly 802 WVWLKFQEWVSLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEAT 866
Fly 867 MKLMAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLIS 931
Fly 932 IMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRF-PDGDLPRWNFTDFMHSFMIVFR 995
Fly 996 VLCGEWIESMWDCMYV-GDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNK 1059
Fly 1060 IAEAFNRIGRFKSWVKRNIADCFK---LIRNKLTNQISDQPSGERTNQISWIWSEGKGVCRCISA 1121
Fly 1122 EHGDNELELGHD-EILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDD 1185
Fly 1186 TASINSYGSHKNRPF----------KDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEG 1240
Fly 1241 PLDGDIIIHAHDEDILDE----YPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENK 1301
Fly 1302 YFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNA 1366
Fly 1367 WCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIF 1431
Fly 1432 NVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEI--IPNRNAC-----ESENYTWVNSA 1489
Fly 1490 MNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNL 1554
Fly 1555 FIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDK 1619
Fly 1620 KFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNL 1684
Fly 1685 FDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALF 1749
Fly 1750 NICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINE 1814
Fly 1815 EA--CDPPDNDKG--YPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLT 1875
Fly 1876 DDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVD 1940
Fly 1941 ILDALTKDFFARKGNPIEETGEIGEI---------AARPDTEGYEPVSSTLWRQREEYCARLIQH 1996
Fly 1997 AWRKH 2001 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
para | NP_001259619.1 | Ion_trans | 165..436 | CDD:278921 | 165/290 (57%) |
Na_trans_cytopl | 515..648 | CDD:288761 | 33/137 (24%) | ||
Ion_trans | 835..1028 | CDD:278921 | 124/194 (64%) | ||
Na_trans_assoc | 1054..1296 | CDD:284034 | 49/259 (19%) | ||
Ion_trans | 1318..1571 | CDD:278921 | 158/259 (61%) | ||
Na_channel_gate | 1561..1613 | CDD:240441 | 35/51 (69%) | ||
Ion_trans | 1636..1871 | CDD:278921 | 145/238 (61%) | ||
GPHH | 1880..1930 | CDD:293510 | 23/49 (47%) | ||
Scn1a | NP_110502.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 28..60 | 13/53 (25%) | |
I. /evidence=ECO:0000305 | 110..454 | 191/345 (55%) | |||
Ion_trans | 127..433 | CDD:395416 | 174/307 (57%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 458..528 | 16/77 (21%) | |||
Na_trans_cytopl | 510..718 | CDD:403218 | 61/285 (21%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 584..628 | 12/58 (21%) | |||
II. /evidence=ECO:0000305 | 750..1022 | 167/271 (62%) | |||
Ion_trans | 767..980 | CDD:395416 | 137/212 (65%) | ||
Na_trans_assoc | 1006..1213 | CDD:399489 | 49/259 (19%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1129..1163 | 11/40 (28%) | |||
III. /evidence=ECO:0000305 | 1200..1514 | 188/315 (60%) | |||
Ion_trans | 1217..1492 | CDD:395416 | 165/275 (60%) | ||
Na_channel_gate | 1484..1536 | CDD:240441 | 36/52 (69%) | ||
IV. /evidence=ECO:0000305 | 1523..1821 | 175/297 (59%) | |||
Ion_trans | 1540..1796 | CDD:395416 | 155/255 (61%) | ||
S1-S2 loop of repeat IV. /evidence=ECO:0000250|UniProtKB:A2APX8 | 1561..1571 | 3/9 (33%) | |||
S3b-S4 loop of repeat IV. /evidence=ECO:0000250|UniProtKB:A2APX8 | 1619..1636 | 11/16 (69%) | |||
GPHH | 1808..1855 | CDD:407139 | 22/46 (48%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1986..2009 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 342 | 1.000 | Domainoid score | I1036 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 1645 | 1.000 | Inparanoid score | I74 |
OMA | 1 | 1.010 | - | - | QHG52281 | |
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000268 | |
OrthoInspector | 1 | 1.000 | - | - | otm45846 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100419 | |
Panther | 1 | 1.100 | - | - | O | PTHR10037 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X214 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
12 | 11.980 |