DRSC/TRiP Functional Genomics Resources

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Protein Alignment para and tpcn2

DIOPT Version :9

Sequence 1:NP_001259619.1 Gene:para / 32619 FlyBaseID:FBgn0285944 Length:2145 Species:Drosophila melanogaster
Sequence 2:NP_001071190.1 Gene:tpcn2 / 777614 ZFINID:ZDB-GENE-061103-202 Length:774 Species:Danio rerio


Alignment Length:823 Identity:153/823 - (18%)
Similarity:294/823 - (35%) Gaps:268/823 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1238 EEGPL--------DGDIIIHAHDEDILDEYPADCCP----------------------DSYYKKF 1272
            ||.||        .||  ..||.|..| .||.:..|                      |.|.::.
Zfish     2 EEEPLLAGSINQGSGD--YGAHSESCL-HYPDEHTPRSRRLSYSVTDDSCNVEEDADADLYVQQA 63

  Fly  1273 PILAGDD----------DSPFWQGWGNLRLKTFQLIENKYFETAV-----ITMILMSSLALA--- 1319
            .:...|.          ||      |:|||..:      |:....     :|:.::.:||..   
Zfish    64 VVFIEDAIKYRSINHRVDS------GSLRLYRW------YYSNLCQWGLGLTIAVVLALAFIERP 116

  Fly  1320 -----LEDVHLPQRP------ILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFV 1373
                 ..|:.:..:|      :.:.|    :.:...||.|::..|...:|::.:..|.|.....:
Zfish   117 SSLTYTSDIRVKPKPWEPPCGMTEGI----EIVCLCIFILDVTAKGYLIGWEEFRMNKWLLAYLI 177

  Fly  1374 IVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCL 1438
            ::..|:|:::.|:    .:...:.:|..|.:||...:.....|:..:..:.:.:|.|.:|:|:..
Zfish   178 VITASVIDWMLSI----SMLCDENLRVRRLIRPFFLLQNSSLMKKTLKCIKRTLPEIASVILLLA 238

  Fly  1439 IFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLF 1503
            :...:|.::|:.:||    |.:|           |.:|. |.:.|        |.::..|...|.
Zfish   239 LHICLFTMIGMLIFA----KSDD-----------PKQNG-EWQTY--------FRNLPKALSSLL 279

  Fly  1504 QVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNF----- 1563
            .:.|......:|           .|....|....::|:.|.:||::..:||...:|.:.|     
Zfish   280 VLLTTANNPDVM-----------IPAYSLNRGYSIFFILFSVFGTYLLMNLMTAIIYNQFRGYLL 333

  Fly  1564 --------------------------NEQKKKAGGSLE-----MFMT------------------ 1579
                                      .....:|.|.:|     ||:.                  
Zfish   334 MSVQTSIIRRRLGIRAAFEVLCCPGRGHTSTQAEGHVERVAVSMFLKVMERVHMKSYCRQAIVKA 398

  Fly  1580 -----------EDQKKYYNAMKKMGSKK-PLKAIPRPRWRPQAIV-FEIVTDKKFDIIIMLFIGL 1631
                       ||.::.:|.:.|...|: |    |:|.:....:. .:.|....:..::...:.|
Zfish   399 ARRFPDGFISGEDFQRLFNELDKDFVKEHP----PKPEYSSSGLQHIQYVYSHYYISVLGNAVAL 459

  Fly  1632 -------NMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYH-YFIEPWNLFD-- 1686
                   .:..:..:: .||:.....::.:|.||::.:..|.||||.|..:. |.....|:||  
Zfish   460 ANVICICTVLVLNAEK-SASEKNYFYMEIINCIFILYYLIEMLLKIVAFGWKGYLSYRNNIFDGF 523

  Fly  1687 VVVVILSI-LGLVLSDIIEKYFVSPT---------LLRVVRVAKVGRVLRLVKGAK---GIRTLL 1738
            :.|::|:| :.:.::..|....|.|.         ::|:|.:..|.|.||::...|   .:.:.:
Zfish   524 LTVLLLAIQIVIFITFKIPYVDVDPVPRHVMALWEMIRLVNMLIVFRFLRIIPEIKLMAVVASTI 588

  Fly  1739 FALAMSLPALFNICLLLFLVMFIFAIFGMSFF---------MHVKEKSGINDV------------ 1782
            ..|..:|.|...|   |.:|.::||:.|:..|         |.:...|.:.::            
Zfish   589 VDLVKNLRAFAGI---LLVVYYMFAVLGIWLFQGAISPPSNMSLVSNSSLENITGPYSMECGTFE 650

  Fly  1783 ------YNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLL 1841
                  .||..|..|:|||:.:.....|....||.                     |.....:.|
Zfish   651 QLEYWPNNFDDFASSLILLYNIMVVNNWHVFTDAY---------------------ARYTTDWSL 694

  Fly  1842 SYLVI----SFLIVINMYIAVILENYSQATEDVQEGLTDDDYD 1880
            .|.|:    |.::.:|:::|:||||::... |...||:.:|.:
Zfish   695 VYFVVWWLTSSVMWVNLFVALILENFTYKW-DRSNGLSVEDVE 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
paraNP_001259619.1 Ion_trans 165..436 CDD:278921
Na_trans_cytopl 515..648 CDD:288761
Ion_trans 835..1028 CDD:278921
Na_trans_assoc 1054..1296 CDD:284034 22/97 (23%)
Ion_trans 1318..1571 CDD:278921 47/297 (16%)
Na_channel_gate 1561..1613 CDD:240441 14/118 (12%)
Ion_trans 1636..1871 CDD:278921 62/281 (22%)
GPHH 1880..1930 CDD:293510 0/1 (0%)
tpcn2NP_001071190.1 Ion_trans 129..328 CDD:278921 45/241 (19%)
Ion_trans 486..720 CDD:278921 58/257 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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