DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment para and tpcn1

DIOPT Version :9

Sequence 1:NP_001259619.1 Gene:para / 32619 FlyBaseID:FBgn0285944 Length:2145 Species:Drosophila melanogaster
Sequence 2:XP_695923.4 Gene:tpcn1 / 567534 ZFINID:ZDB-GENE-060526-199 Length:811 Species:Danio rerio


Alignment Length:851 Identity:170/851 - (19%)
Similarity:311/851 - (36%) Gaps:272/851 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1241 PLDGDIIIHAHDEDILDE--YPADCCPD---------SYYKKFPILA-----GDDDSPFWQGWGN 1289
            |:||     |.:.|:::.  .||....|         |:...|...|     |:::..|:....:
Zfish    31 PVDG-----AGNHDVVNNVTIPASGASDPRAQNSLQQSWEMNFQEAAIYLQEGENNDKFFTHPRS 90

  Fly  1290 LRLKTFQLIENK--YFETAVITMILMSSLALALEDVHLPQRPILQDILYY-----MDRIFTVIFF 1347
            ....:..|..:.  ::...::|.:|:..|:|:    ..|..|.|:..:|.     :..:..|.|.
Zfish    91 AHALSAYLFAHSHLFYVVELLTAVLLMLLSLS----EAPAVPFLRLDVYVHATLELLALVMVAFE 151

  Fly  1348 LEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMS- 1411
            |.|.::|  |||..:..:....:...::.:..|..:..||     :....:|..|||||:..:. 
Zfish   152 LCMKLRW--LGFHTFIRHKRTMVKTSVLFIQFIEAIVVLV-----RQTSHLRVTRALRPIFLVDC 209

  Fly  1412 RMQG-MRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNR 1475
            |..| :|..:..:.|::|...::||:.|.|.:||||:|..||                       
Zfish   210 RYCGAVRRNLRQIFQSLPPFIDILLLLLFFMVIFAILGFCLF----------------------- 251

  Fly  1476 NACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYF 1540
            :|..:::|        |..:.|:.:.||.:.|...:..:|           .|....|.:..::|
Zfish   252 SANTADHY--------FSTLENSIVSLFVLLTTANFPDVM-----------MPAYSKNRWSCIFF 297

  Fly  1541 VFFIIFGSFFTLNLFIGVIIDNFN--------------------------EQKKKAGGSLEMF-- 1577
            :.::....:|.:||.:.|:.|.||                          .:::..|.||:.|  
Zfish   298 IVYLSIELYFIMNLLLAVVFDTFNGVEKMKFKSLLLHKRSAIEHAFQLLVSRQRPDGVSLKQFDG 362

  Fly  1578 --------MT-EDQKKYYNAMKKMGSKKPLKAI------------------PRPRW-----RPQA 1610
                    || .|:...:.|:...|:  |:.::                  ....|     |...
Zfish   363 LMRFYHPRMTPRDRFLTFKALNHSGA--PMLSLQDFYKFYEVIGLKWKARRSGEHWFDDLPRTAL 425

  Fly  1611 IVFE----IVTDKKFDIIIMLFIGLNMFTMTLDRYDASD--TYNAVLDYLNAIFVVIFSSECLLK 1669
            ::|:    :|..|.|...:.|.:.:|...:.::....:|  ::..|:.:...||:.|:..|.|||
Zfish   426 LIFKGINLLVKSKAFQYAMYLVVAVNGIWILVETNMLNDGISWTRVVPWSYIIFLTIYGIEVLLK 490

  Fly  1670 IFAL-RYHYFIEPWNLFDVVVVILSILGLV--LSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGA 1731
            |..| ...||...|||||..|.:.:.|||:  ..|:...||:  .:||.:      ::|||.|..
Zfish   491 ITGLGPITYFSSGWNLFDFSVTVFAFLGLIALAFDMEPFYFI--VVLRPL------QLLRLFKIK 547

  Fly  1732 KGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHV----------------------- 1773
            :..|.:|..:....|.:.::.|.|.:..:.|||.||.||..|                       
Zfish   548 QRYRNVLDTMFELFPRMASLGLTLIIFYYSFAIVGMEFFADVIYPNCCDNSTVAASYRQINVTTG 612

  Fly  1774 ---KEKSGINDVYNFKTFGQSMILLFQMSTSAGW----DGV------------------------ 1807
               :.:.|...:.||.....|.:.||:::....|    :||                        
Zfish   613 NRTELQEGYYYLNNFNNILSSFVTLFELTVVNNWYITMEGVTSQTTHWSRLYFMTFYIVTMVVMT 677

  Fly  1808 ------LDAII--------NEEACDPPDNDKG------------------YPGNCGSATVGITFL 1840
                  |||.:        |.|..|.|:::||                  |     ..|:|:|.|
Zfish   678 IIVAFILDAFVFRMNYSRKNREPLDDPEDEKGIVFETEVSQTEALQTLDFY-----KHTLGVTNL 737

  Fly  1841 LSYLVISFLIVINMYIA---------VILENYSQATEDVQEGLTDDDYDMYYEIWQQ--FDPEGT 1894
            .|        :.:|.:|         |.|...|:...|:...:.:::...:||.:.:  ...:||
Zfish   738 TS--------LQDMCVALERSGQTSLVFLGRRSRTKSDLSMKMYEEEIQEWYEEYSRTNLQTDGT 794

  Fly  1895 QYIRYD 1900
            .:...|
Zfish   795 FHRELD 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
paraNP_001259619.1 Ion_trans 165..436 CDD:278921
Na_trans_cytopl 515..648 CDD:288761
Ion_trans 835..1028 CDD:278921
Na_trans_assoc 1054..1296 CDD:284034 13/70 (19%)
Ion_trans 1318..1571 CDD:278921 56/285 (20%)
Na_channel_gate 1561..1613 CDD:240441 15/111 (14%)
Ion_trans 1636..1871 CDD:278921 74/334 (22%)
GPHH 1880..1930 CDD:293510 5/23 (22%)
tpcn1XP_695923.4 Ion_trans 139..325 CDD:278921 51/234 (22%)
Ion_trans 477..688 CDD:278921 54/218 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2301
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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