Sequence 1: | NP_001259619.1 | Gene: | para / 32619 | FlyBaseID: | FBgn0285944 | Length: | 2145 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_008760136.1 | Gene: | Scn3a / 497770 | RGDID: | 3635 | Length: | 1983 | Species: | Rattus norvegicus |
Alignment Length: | 2127 | Identity: | 966/2127 - (45%) |
---|---|---|---|
Similarity: | 1315/2127 - (61%) | Gaps: | 253/2127 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 FRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLE 80
Fly 81 QGVPIPVRLQGSFPPELASTPLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRV 145
Fly 146 AIYILVHPLFSLFIITTILVNCILMIMPTTPT-VESTEVIFTGIYTFESAVKVMARGFILCPFTY 209
Fly 210 LRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDV 274
Fly 275 IILTMFSLSVFALMGLQIYMGVLTQKCIKKFPLD------------------GSWGNLTDE--NW 319
Fly 320 DYHNRNSSNWYSEDEGISFP-LCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFR 383
Fly 384 LMTQDFWEDLYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEE 448
Fly 449 AIREAEEAAAAKAAKLEERANAQAQAAADAAAAEEAAL---------HPEMAKSPTYSCISY--- 501
Fly 502 -------ELFVGGEKGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSL 559
Fly 560 PGSPFNIRRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSE-EN 623
Fly 624 GAIIVPVYYGNLGSRHSSYTSHQSRI--SYTSHGDLLGGMAVMGVSTM--TKESKLRNRNTRNQS 684
Fly 685 VGATNGGTTCLDTNHKLDHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIE 749
Fly 750 QAAGRHSRASDRGVSVYYFPT---EDDDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKFQEWV 811
Fly 812 SLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKY 876
Fly 877 YFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALG 941
Fly 942 NLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRF-PDGDLPRWNFTDFMHSFMIVFRVLCGEWIESM 1005
Fly 1006 WDCMYV-GDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGR 1069
Fly 1070 FKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEGKGVCRCISAEHGDNELELGHD- 1133
Fly 1134 EILADGL-IKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKN 1197
Fly 1198 RPFKDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDILDEYPAD 1262
Fly 1263 CCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQ 1327
Fly 1328 RPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGI 1392
Fly 1393 QAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYF 1457
Fly 1458 KC-EDMNGTKLSHEIIPNRNACES--ENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAI 1519
Fly 1520 DSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKK 1584
Fly 1585 YYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNA 1649
Fly 1650 VLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLR 1714
Fly 1715 VVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGI 1779
Fly 1780 NDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEA--CDPPDNDKGYP-----GNCGSATVGI 1837
Fly 1838 TFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQL 1902
Fly 1903 SEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEI- 1966
Fly 1967 --------AARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKH--KARGEG-GGSFEPDTDHGDG 2020
Fly 2021 GDPDAGDPAPDEATDGDAPAGGDGSVNGTAEGAADADESNVNSPGED 2067 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
para | NP_001259619.1 | Ion_trans | 165..436 | CDD:278921 | 168/292 (58%) |
Na_trans_cytopl | 515..648 | CDD:288761 | 33/133 (25%) | ||
Ion_trans | 835..1028 | CDD:278921 | 124/194 (64%) | ||
Na_trans_assoc | 1054..1296 | CDD:284034 | 50/243 (21%) | ||
Ion_trans | 1318..1571 | CDD:278921 | 160/255 (63%) | ||
Na_channel_gate | 1561..1613 | CDD:240441 | 35/51 (69%) | ||
Ion_trans | 1636..1871 | CDD:278921 | 147/241 (61%) | ||
GPHH | 1880..1930 | CDD:293510 | 25/49 (51%) | ||
Scn3a | XP_008760136.1 | Ion_trans | 149..434 | CDD:278921 | 166/287 (58%) |
Na_trans_cytopl | 510..629 | CDD:288761 | 35/142 (25%) | ||
Ion_trans | 760..955 | CDD:278921 | 124/194 (64%) | ||
Na_trans_assoc | 981..1183 | CDD:284034 | 50/242 (21%) | ||
Ion_trans | 1206..1460 | CDD:278921 | 158/253 (62%) | ||
Na_channel_gate | 1452..1504 | CDD:240441 | 36/52 (69%) | ||
Ion_trans | 1526..1764 | CDD:278921 | 147/240 (61%) | ||
ChtBD1 | 1691..>1726 | CDD:302575 | 16/37 (43%) | ||
GPHH | 1776..1831 | CDD:293510 | 27/54 (50%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 342 | 1.000 | Domainoid score | I1036 |
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 1645 | 1.000 | Inparanoid score | I74 |
OMA | 1 | 1.010 | - | - | QHG52281 | |
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000268 | |
OrthoInspector | 1 | 1.000 | - | - | otm45846 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100419 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR10037 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X214 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
13 | 12.880 |