DRSC/TRiP Functional Genomics Resources

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Protein Alignment para and cch1

DIOPT Version :9

Sequence 1:NP_001259619.1 Gene:para / 32619 FlyBaseID:FBgn0285944 Length:2145 Species:Drosophila melanogaster
Sequence 2:NP_593894.1 Gene:cch1 / 2542812 PomBaseID:SPAC6F6.01 Length:1854 Species:Schizosaccharomyces pombe


Alignment Length:1945 Identity:376/1945 - (19%)
Similarity:674/1945 - (34%) Gaps:687/1945 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 EDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNC 167
            :.:.||:::..:.:..:..:.:....|::......||:||.|   .|..|||:::||...|:::.
pombe   138 DKLSPYFTHFFSEIYAAVLRVVGPPRANETPGRNLPFSPILR---QIYNHPLYNIFIFVVIVLHA 199

  Fly   168 ILMIMPT------TPTVESTEVIFTGIYTFESAVKVMARGFIL----------------CPFT-- 208
            :|:::.:      :.|::...::...:||.|..:|:...||:.                .|.|  
pombe   200 VLLMIRSDDPHDKSQTIDYLIIVIGILYTLEMLLKIYLFGFLYDGSSSFYDFINSYTKKTPRTMS 264

  Fly   209 YLRDAWNWLDFVVIALAYVTM------GID--LGNLAALRTFRVLR-ALKTVAIVPGLKTIVGAV 264
            |||.:||.:|||.|...::::      ||.  ...:|.||..|:|. ..||..|:..||      
pombe   265 YLRHSWNRVDFVAIVALWISVIGKKQQGIFRLFSMIACLRLTRLLNITRKTETILKSLK------ 323

  Fly   265 IESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSW-GNLTDE----------N 318
             ||...|..|:....|...:.|::|:|.:...|.::|:        | |:..|:          :
pombe   324 -ESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQCV--------WLGDYGDQYLPTGQFCGGH 379

  Fly   319 WDYHNRNSSNWYSEDEGISFPLCGNISGAG-QCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAF 382
            |:...:.:   |.:..|  ||  .|::..| .|.:..||  ....||.....|||:|..:....|
pombe   380 WENGIKRA---YLDKNG--FP--SNVNPRGFICAEKSVC--RVVENPYSNTVSFDNFFNSLELIF 435

  Fly   383 RLMTQDFWEDLYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEE 447
            .:|:.:.:.|:...::.|......|.||:..:..:.:|::|::|:|..|:.:||...:       
pombe   436 VIMSSNGFTDIMYDIMDAEYFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGK------- 493

  Fly   448 EAIREAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGND 512
                                                                             
pombe   494 ----------------------------------------------------------------- 493

  Fly   513 DNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT 577
             |.||:.|:                                                    .|:.
pombe   494 -NQKEQKSV----------------------------------------------------DKHL 505

  Fly   578 IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSY 642
            |||                    :..:::|                       :|.|        
pombe   506 IRN--------------------KLCEKYL-----------------------FYSN-------- 519

  Fly   643 TSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRNQSVGATNGGTTCLDTNHKLDHRDYE 707
                                                                             
pombe   520 ----------------------------------------------------------------- 519

  Fly   708 IGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED 772
                              ||                                             
pombe   520 ------------------FI--------------------------------------------- 521

  Fly   773 DDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNTMFMAM 837
                                                 |:|.||..     |:|||        ..
pombe   522 -------------------------------------WISFIVAQ-----FVTLC--------TQ 536

  Fly   838 DHHDMNKEMERVLKSGNYFFTAT---FAIEATMKLMAMSPKY--YFQEGWNIFDFIIVALSLLEL 897
            .:...:....|.|    .|:...   .|.|..::..|..|.|  :|:...|:.|.::..|:|:.|
pombe   537 TYDQTSSTANRYL----IFYACVDFLLAAEVILRFFAYLPDYRLFFRRYTNLVDIVLAVLNLVTL 597

  Fly   898 GLEGVQGLSV----LRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMG 958
             |..::...|    |..|.:.|:::.....|....:..::......|.||...|.|::||.::..
pombe   598 -LPSIRKNPVAFGWLSIFAIARIYRCILLIPYTRKIAKLLFSNFKQLLNLMLFLVIVLFIASLCA 661

  Fly   959 MQLFGKNYHDHKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGE-WIESMWDCMYVGD-------VS 1015
            ::||....:|     .|.|....:|.....||:.::::|..| |.    |.|:...       :|
pombe   662 VRLFQDLPND-----GDSDDDAISFATTYESFLYMYQILTSENWT----DVMFAIQARLAHLHLS 717

  Fly  1016 CIP--FFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNI 1078
            .||  ||....:..|.|||::|:|::..||..|               |:..::.:.|.::.|  
pombe   718 WIPGAFFTLWFLFSNNVVLSMFIAVIQVNFAPS---------------ESDLKMEQLKMYLAR-- 765

  Fly  1079 ADCFKLIRN------KLTNQISDQPSGERTNQISWIWSEGKGVCRCISAEHGDNELELGHDEILA 1137
                 |:||      .||.....:.:|.|         :||.|             :..|.|.|.
pombe   766 -----LLRNYNPFQASLTLNALIKRNGSR---------KGKTV-------------DESHYEWLY 803

  Fly  1138 DGLIKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKY----LNN-----ATDDDTASINSYG 1193
            :..|.||....|.:...  :.::.::     :..|:.|||    |:|     ...||        
pombe   804 EDNIIKGFLRVTNIPPK--EPLKPSL-----DTSPELSKYSLAKLSNNFKRFVMRDD-------- 853

  Fly  1194 SHKNRPF--------------KDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDG 1244
                 ||              ||.:.|.:|:.|:      |:|                      
pombe   854 -----PFSQAYFKRVIGIRWEKDMNLKTAAKDMQ------AAK---------------------- 885

  Fly  1245 DIIIHAHDEDILDEYPA--DCC----PDSYYKKF---PILAGDDD-----SPF-WQGWGNLRLKT 1294
             ..:.....:.|..:|.  |..    |.:..::|   .::.|.::     .|: |         .
pombe   886 -AFVRIKQTEFLKNHPKYNDVFWVIKPSNRIRRFCQRLVMPGVNERYGGVEPYQW---------V 940

  Fly  1295 FQLIENKYFETAVITMILMSSLALAL-EDVHLPQRPILQDILY----YMDRIFTVIFFLEMLIKW 1354
            :::|: .:....::|.:::..:|..: |..||     |.|..:    :.:..|..||.:|..||.
pombe   941 YRVIQ-VFIYACILTAVIIECIATPIYERDHL-----LNDKQHAWFVWTEVAFATIFTIEAAIKI 999

  Fly  1355 LALGF----KVYFTNAWCWLDFVIVMVSLINFVASLVGAGGI-QAFKTMRTLRALRPLRAMSRMQ 1414
            :|.||    ..|..:.|..:||.:::...||..|.|.....: :||:..:.||.||.:......|
pombe  1000 IADGFCITPNAYLRSTWNCIDFFVLVTLWINLYAVLTSHALLSRAFRAFKALRVLRLINLTQTSQ 1064

  Fly  1415 GMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACE 1479
              |:..:||:.....||:..:|.....:.||:....:|.|..:.|.|.|....|..::  ..|..
pombe  1065 --RMFHDALISGFFKIFSAAVVSATLLIPFALWAKNVFGGLLYSCNDDNVLSASQCVL--EYAST 1125

  Fly  1480 SENY------TWVNSA-MNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMY 1537
            ..|:      .|.|.. .:||...:|.|.||::|:.:||:.||...:|....:.||....:....
pombe  1126 PNNWEVWAPRVWSNPPDYDFDRFPHALLALFEIASIEGWVDIMRSVMDITGFNNQPQTNASSGNA 1190

  Fly  1538 LYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIP 1602
            ::||.|.:....:.|.|||.:||.|:.|:...|      |.|.:|:.:....:|:.|.:|.|   
pombe  1191 MFFVLFNLVSMIYILTLFIAIIISNYAERTGSA------FFTAEQRAWLELRRKIKSMRPSK--- 1246

  Fly  1603 RPRWRP---QAIVFEIVTDKKFDIIIMLFIGLN----MFTMTLDRYDASDTYNAVLDYLNAIFVV 1660
            ||..||   :.:.::... :|..|....|.||.    :|.:|: .|.....|..|.:.:..|..:
pombe  1247 RPAIRPLGLRGLCYDFAV-QKHGIWRRTFTGLYIVHLLFLLTI-FYPCPIAYTYVRNSIFLILSI 1309

  Fly  1661 IFSSECLLKIFALRYHYFIEP-WNLFDVVVVILSILGLVLSDIIEKY------FVSPTLLRVVRV 1718
            .::....:|::.|.::||... ||:|||||.:.|:...:.  |:.|:      .:..|||.:|.|
pombe  1310 CYTINICVKVYGLSFYYFFHSFWNMFDVVVTLGSLTCNIA--ILAKFENRSLTLLQTTLLVLVTV 1372

  Fly  1719 AKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFI-FA-----IFGMSFFMHVKEKS 1777
                   .|:........|...:..|||::|:: :..::|::| ||     |||::       |.
pombe  1373 -------HLIPKFDNFDQLSKTVVASLPSIFSL-IATWIVLYITFAIAFNQIFGLT-------KL 1422

  Fly  1778 GIN--DVYNFKTFGQSMILLFQMSTSAGWDGVL-DAIINEEACDPPDNDKGYPGNCGSATVGITF 1839
            |:|  ...||::...:::|||.|:...||:.|: |..|:...|  .:.|..|..:||:.......
pombe  1423 GLNGGPNKNFRSIRNALVLLFTMTFGEGWNDVMHDYTISYPNC--VNGDDFYNSDCGNKPWAYGL 1485

  Fly  1840 LLSYLVISFLIVINMYIAVILENYS--QATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYI 1897
            .:::.:||..|.:||:|.|:.:|:|  .........|..:|:..:.:.|..|||..|.||
pombe  1486 FIAWNIISMYIFVNMFITVVFDNFSYIHTKSSSFTNLQRNDFRQFKDSWAPFDPMVTGYI 1545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
paraNP_001259619.1 Ion_trans 165..436 CDD:278921 72/315 (23%)
Na_trans_cytopl 515..648 CDD:288761 10/132 (8%)
Ion_trans 835..1028 CDD:278921 45/211 (21%)
Na_trans_assoc 1054..1296 CDD:284034 45/285 (16%)
Ion_trans 1318..1571 CDD:278921 72/269 (27%)
Na_channel_gate 1561..1613 CDD:240441 14/54 (26%)
Ion_trans 1636..1871 CDD:278921 65/252 (26%)
GPHH 1880..1930 CDD:293510 7/18 (39%)
cch1NP_593894.1 Ion_trans 201..485 CDD:278921 71/307 (23%)
Ion_trans 533..748 CDD:278921 54/236 (23%)
Ion_trans 968..1220 CDD:278921 71/260 (27%)
Ion_trans 1289..1517 CDD:278921 64/246 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 114 1.000 Domainoid score I1537
eggNOG 1 0.900 - - E1_KOG2301
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R175
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.840

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