DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment S-Lap4 and lap3

DIOPT Version :9

Sequence 1:NP_729613.1 Gene:S-Lap4 / 326188 FlyBaseID:FBgn0052064 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_001011124.1 Gene:lap3 / 496537 XenbaseID:XB-GENE-1006711 Length:520 Species:Xenopus tropicalis


Alignment Length:507 Identity:207/507 - (40%)
Similarity:308/507 - (60%) Gaps:19/507 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 RTACGGESKS-------SKGLVVGVYQKENDNDP-KLTPAGEKVNDRLHGKLQEMICQSKITGHL 81
            |..|.|.:.|       .||||:|||:||.:.:. .||.||:.|::.:.|||::.:.:|..:...
 Frog    14 RNCCRGFAVSQQNYNSVKKGLVLGVYEKEKEEESLTLTNAGDAVDNAVLGKLRDQLARSGPSLKK 78

  Fly    82 GRGKIFNNIDPEFRSMAVVGVGLEGIGFNELEMLDEGMENVRVAAGIGARSLQEIGVSEVFVDGM 146
            |:.:||..:..:|.|:.|||:|.:..|.|:.|:.:|..||:|.|..:|.|.:|::.:.:|.||..
 Frog    79 GKSRIFYGLHEDFPSIVVVGLGKKSAGVNQHELWNEAKENIRAAVSVGCRQMQDMEIVQVEVDPC 143

  Fly   147 DYAEQAAEGAVLAVWRYCDMNSKRKPPHIPKLELYESPDYEGWTRGVFKAEAQNLARRMCDTPAC 211
            ..|:.|||||||.::.|.:|..|:|  ......|:.|.:...|.:||..||.|||||.:.:.||.
 Frog   144 GDAQAAAEGAVLGLFEYNEMKKKKK--KAVTTHLHGSSEITAWEKGVLYAEGQNLARHLMEAPAN 206

  Fly   212 CMTPTLFAQATVDALCPCGITVEI--RTMEWIEQQRLHSFLMIAKGSCEPPVLMEITYCGTNPED 274
            .:|||.||:.....|...|..|::  |:.:|||:|::.:||.:||||.||||.:||.|.|::...
 Frog   207 YITPTKFAETFEQRLANMGSNVKVFTRSKQWIEEQQMGAFLSVAKGSEEPPVFLEIHYSGSSDAS 271

  Fly   275 K-PILFLGKGITFNSGAMNLRKCRGMEEYRACMSGAASCVAMMRCVAALALPINVCCIIPLCENM 338
            : |::|:|||:||:||.::|:...||:..|..|.|||:..:.:...|.|.||||:..:.||||||
 Frog   272 QPPLVFVGKGVTFDSGGISLKPSSGMDAMRGDMGGAATVCSAITTAAKLKLPINIISLAPLCENM 336

  Fly   339 PSGMACKPGDVVTLMNHKSMAVRNLDKAGVVVMADPLLYGQSTYKPRLVVDVATLGSGVKKAFGG 403
            |:|.|.||||||...|.|::.|.|.|..|.:::||.|.|..| :.||.:|:.|||...:..|.|.
 Frog   337 PNGRANKPGDVVKAKNGKTIQVDNTDAEGRLLLADALCYAHS-FNPRAIVNAATLTGAMDVALGS 400

  Fly   404 GATGIFSNSHYIWKQFQSAGALTGDRVWRLPLWNYYRKQITDEMGYDLSNDGR--GLANSCLAAA 466
            .|.|:|:||.::|...|.|..:|||||||:||:.:|.||:|:....||:|.|:  ....:|.|||
 Frog   401 AAAGVFTNSSWLWTHLQEASVVTGDRVWRMPLFEHYSKQVTESALADLNNIGKYSRSGGACTAAA 465

  Fly   467 VLHELVPCVDWAHLDTRGTGLLTKYGLVPYLTAKYMTGRPTRTLAQFLYQMA 518
            .|.|.|....|||||.  .|:::....|||| .|.|:|||||||.:|..:::
 Frog   466 FLKEFVTAPHWAHLDI--AGVMSNKDEVPYL-RKGMSGRPTRTLIEFAARLS 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
S-Lap4NP_729613.1 PRK00913 31..514 CDD:234863 203/495 (41%)
Peptidase_M17 35..514 CDD:238247 202/484 (42%)
lap3NP_001011124.1 Peptidase_M17 32..510 CDD:238247 202/483 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 94 1.000 Domainoid score I7325
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D399611at33208
OrthoFinder 1 1.000 - - FOG0001058
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11963
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X713
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.020

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