DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment S-Lap4 and lap-1

DIOPT Version :9

Sequence 1:NP_729613.1 Gene:S-Lap4 / 326188 FlyBaseID:FBgn0052064 Length:524 Species:Drosophila melanogaster
Sequence 2:NP_498854.1 Gene:lap-1 / 176185 WormBaseID:WBGene00002249 Length:491 Species:Caenorhabditis elegans


Alignment Length:344 Identity:90/344 - (26%)
Similarity:145/344 - (42%) Gaps:63/344 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 AEAQNLARRMCDTPACCMTPTLFAQATVDALCPCG------ITVEIRTMEWIEQQRLHSFLMIAK 254
            :|:.....|:.||||..:|    ..|.||.....|      ||| ||..|.: :........:.|
 Worm   167 SESVRETARLIDTPANILT----TDALVDEAVKVGNATGSKITV-IRGEELL-KAGFGGIYHVGK 225

  Fly   255 GSCEPPVLMEITYCGTNPEDKP-----ILFLGKGITFNSGAMNLRKCRGMEEYRACMSGAASCVA 314
            ....||..:.:::      :.|     |..:|||:.:::|.:.::...||...:..|.|||   .
 Worm   226 AGPTPPAFVVLSH------EVPGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAA---G 281

  Fly   315 MMRCVAAL-----ALPINVC-CIIPLCENMPSGMACKPGDVVTLMNHKSMAVRNLDKAGVVVMAD 373
            |:...:||     :..::.| ||:   ||..|.:|.||.|::.:::.|::.:.|.|..|.:::||
 Worm   282 MLEAYSALVKHGFSQTLHACLCIV---ENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILAD 343

  Fly   374 PLLYGQSTYKPRLVVDVATLGSGVKKAFGGGATG-IFSNSHYIWKQFQSAGALTGDRVWRLPL-- 435
            .:.|.:.|.|...:.|:||| :|.:....|...| ..:|...:..:...||..:||.|  .|:  
 Worm   344 GVFYAKETLKATTIFDMATL-TGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLV--APMLF 405

  Fly   436 -----WNYYRKQITDEMGYDLSN-DGRGLANSCLAAAVLHELVPCVDWAHLD--------TRGTG 486
                 :...:..|.|....:|.. ||...|.:.|...........:.|.|||        .||||
 Worm   406 APDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLFIGAHIGFGEGLRWLHLDIAAPAEVGDRGTG 470

  Fly   487 --------LLTKYGLVPYL 497
                    ||.||..||.|
 Worm   471 YGPALFSTLLGKYTSVPML 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
S-Lap4NP_729613.1 PRK00913 31..514 CDD:234863 90/344 (26%)
Peptidase_M17 35..514 CDD:238247 90/344 (26%)
lap-1NP_498854.1 Peptidase_M17 35..480 CDD:238247 83/333 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0260
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D562530at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.