DRSC/TRiP Functional Genomics Resources

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Protein Alignment scramb1 and Plscr3

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001012139.1 Gene:Plscr3 / 360549 RGDID:1307016 Length:296 Species:Rattus norvegicus


Alignment Length:355 Identity:147/355 - (41%)
Similarity:182/355 - (51%) Gaps:76/355 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 GFMPGPQPAGYAPVPQMPPYGEAPPYGAGQPPYMGGPGGQPPYAG---GPGGQPPYVGGPGGQPH 119
            |::|   |.||||.|       .|||..        |.|.|..|.   |||..|....||     
  Rat     3 GYLP---PKGYAPSP-------PPPYPV--------PAGYPEAAALHPGPGQAPVPTQGP----- 44

  Fly   120 YGGGAPPPQAFGGYP-PGPAGPGGPPNAFGGYPPGQPQQPIVTQPGMGPGMGPGMAPQGGPAGDW 183
                ||.| .|..:| |||..||         |||    |.|..||:                  
  Rat    45 ----APAP-GFSLFPSPGPVVPG---------PPG----PFVPLPGV------------------ 73

  Fly   184 MSIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCT 248
                      |.|||:|..|||:|:.||.|.:|.|.|:||.|::.:::..||::..|||:::||.
  Rat    74 ----------PSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRSGTGQQLGQAAEESNCCA 128

  Fly   249 RNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTIEQEWSICSP 313
            |.|||..||..:|:.|...:||:.:.|||.|.....||.||.:||.||||..||.:.|.|....|
  Rat   129 RLCCGARRPLRIRLADPGDREVLRLLRPLHCGCSCCPCGLQEMEVQAPPGTTIGHVLQTWHPFIP 193

  Fly   314 SFRILNHVGDTVMRIEGPFCTFSLCG-DVEFNVVSL-TGEKIGKISKQWSGLAREIFTDADFFGI 376
            .|.||:.....|:|:.||.||.. || |..|.|.:. ....:|:|||||.||.||..||||.||:
  Rat   194 KFSILDADRQPVLRVVGPCCTCG-CGTDTNFEVKTKDESRSVGRISKQWGGLLREALTDADDFGL 257

  Fly   377 NFPLDLDVRMKAVLLGATFLIDAMFFEKAG 406
            .||:|||||:||||||||||||.|||||.|
  Rat   258 QFPVDLDVRVKAVLLGATFLIDYMFFEKRG 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887 23/70 (33%)
Scramblase 184..404 CDD:252175 106/221 (48%)
Plscr3NP_001012139.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58 27/82 (33%)
Proline-rich domain (PRD). /evidence=ECO:0000250|UniProtKB:O15162 1..58 27/82 (33%)
SH3-binding 1. /evidence=ECO:0000255 7..15 6/14 (43%)
PPxY motif. /evidence=ECO:0000255 15..18 1/2 (50%)
SH3-binding 2. /evidence=ECO:0000255 21..27 3/5 (60%)
SH3-binding 3. /evidence=ECO:0000255 66..71 2/4 (50%)
Scramblase 73..285 CDD:252175 106/240 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0621
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23248
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X164
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.880

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