DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scramb1 and Plscr2

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_001014116.1 Gene:Plscr2 / 315883 RGDID:1359107 Length:311 Species:Rattus norvegicus


Alignment Length:357 Identity:167/357 - (46%)
Similarity:198/357 - (55%) Gaps:77/357 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 PAGYAPVPQMPPYGEAPPYGAGQPPYMGGPGGQPPYAGGPGGQPPYVGGPGGQPHYGGGAPPPQA 129
            |||||  ||.||       .|.|.| :.||             |.:.|.|..|.:|.|    ||:
  Rat    11 PAGYA--PQYPP-------AAFQAP-VSGP-------------PEHTGHPALQTNYQG----PQS 48

  Fly   130 FGGYPPGPAGPGGPPNAFGGYP--------------PGQPQQPIV---TQPGMGPGMGPGMAPQG 177
              |||       ||..   ||.              |.|..|.||   ||               
  Rat    49 --GYP-------GPQT---GYTVSTTGHESYAAARLPTQNNQTIVLINTQ--------------- 86

  Fly   178 GPAGDWMSIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAE 242
                 ||..|..:.|||.|||||..|||:|:.|:|||||..|||||||||.|||:|||.||.|.|
  Rat    87 -----WMPAPPPLLNCPPGLEYLNQIDQILIHQQVELLEVLTGFETNNKFEIKNSLGQMVYVAVE 146

  Fly   243 DNDCCTRNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTIEQE 307
            |.||||||||..:|||.:|:.|:..|||:.:.|||.||||.||||||.||:.||||..||.:.|.
  Rat   147 DTDCCTRNCCEASRPFTLRILDHLGQEVMTLERPLRCSSCCFPCCLQEIEIQAPPGVPIGYVTQN 211

  Fly   308 WSICSPSFRILNHVGDTVMRIEGPFCTFSLCGDVEFNVVSLTG-EKIGKISKQWSGLAREIFTDA 371
            |..|.|...:.|...:.|:::.||....:.|.|::|.:.||.. .:||||:|||||..:|.||||
  Rat   212 WHPCLPKLTLQNDKKEDVLKVVGPCVACTCCSDIDFEIKSLDEVSRIGKITKQWSGCVKEAFTDA 276

  Fly   372 DFFGINFPLDLDVRMKAVLLGATFLIDAMFFE 403
            |.|||.|||||||:||||:|||.||||.||||
  Rat   277 DNFGIQFPLDLDVKMKAVMLGACFLIDYMFFE 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887 21/63 (33%)
Scramblase 184..404 CDD:252175 130/221 (59%)
Plscr2NP_001014116.1 DAZAP2 2..>99 CDD:287943 41/146 (28%)
Scramblase 88..308 CDD:252175 128/219 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348869
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.