DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scramb1 and SPAC343.06c

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_593426.1 Gene:SPAC343.06c / 2543151 PomBaseID:SPAC343.06c Length:381 Species:Schizosaccharomyces pombe


Alignment Length:259 Identity:58/259 - (22%)
Similarity:106/259 - (40%) Gaps:56/259 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 SIPTGIPNCPRGLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDN----- 244
            :||...|..|     |.:.|.|:|::::|::..|.|:|..|::.|.|..||.:.:.||..     
pombe    63 AIPLNSPAAP-----LLSQDVLIVERQLEMMNVFLGYEQANRYVILNQQGQHLGYIAEQGASSIL 122

  Fly   245 DCCTRNCCGPARPFDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTIEQEWS 309
            ...:|......|.|...|.|:..|.|:.::||.:..:....  :.||:.|.....::|.:.|:|.
pombe   123 SSLSRQFFHTHRAFKADVMDSNGQLVLQLNRPFSWINSRLQ--IHSIDYSKFSSTLVGEVLQKWH 185

  Fly   310 ICSPSFRILNHVGDTVMRIEGPFCTFSLCGDVEFNVVS----LTGEK---IGKISKQWSGLAREI 367
            :....:.:.  :....|        |.....::..|:|    |..|:   :|.:|:.:.||.||.
pombe   186 LWRRRYELF--LAKRSM--------FEQFAKIDERVLSWEFLLRNEQDRILGSVSRNFMGLPREF 240

  Fly   368 FTDADFFGINF---------------------------PLDLDVRMKAVLLGATFLIDAMFFEK 404
            |||...:.:.|                           ..|:.:..:||:||:...||..:|.:
pombe   241 FTDTGNYVLRFTSTSAANGSVNENQLLQAAHGIANDVCARDMSLEERAVMLGSAVTIDFDYFSR 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887
Scramblase 184..404 CDD:252175 58/257 (23%)
SPAC343.06cNP_593426.1 LOR 58..304 CDD:295149 58/257 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 59 1.000 Domainoid score I3041
eggNOG 1 0.900 - - E1_KOG0621
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 59 1.000 Inparanoid score I2003
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 1 1.000 - - oto101815
orthoMCL 1 0.900 - - OOG6_100156
Panther 1 1.100 - - O PTHR23248
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1891
SonicParanoid 1 1.000 - - X164
TreeFam 1 0.960 - -
1211.850

Return to query results.
Submit another query.