DRSC/TRiP Functional Genomics Resources

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Protein Alignment scramb1 and scrm-6

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_492890.2 Gene:scrm-6 / 185826 WormBaseID:WBGene00009753 Length:292 Species:Caenorhabditis elegans


Alignment Length:269 Identity:79/269 - (29%)
Similarity:125/269 - (46%) Gaps:26/269 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 QPQQPIVTQPGMGPGMGPGMAPQGGPAGDWMSIPTGIPNCP---RG---------LEYLTTIDQL 206
            |..:|..::...|...|.|..||  |....|.:|..|...|   .|         |:.|.....|
 Worm    24 QKDEPPRSRAEAGMMRGGGRLPQ--PRDTPMEVPNMIAAMPIQMTGFVDLAPHTILDVLAQTTSL 86

  Fly   207 LVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRNCCGPARPFDMRVFDNFQQEVI 271
            ::.|.:|.||.|||.||.|::.:.:...:.:.:..|.:....|...|..|.|.|:..|.|...|:
 Worm    87 MIVQCLEPLEIFTGIETPNRYVVHDMYCRPLLYCMERSSFFARQHQGSQRNFAMQCMDIFGAPVM 151

  Fly   272 HMHRPLACSSCLFPCCLQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHVGDTVMRIEGPFCTFS 336
            :..|...|.||      .....:...|..||.:::|  .|..:|.::....:..:.:..|.|  :
 Worm   152 NCFRSRPCCSC------DDFLATEFLGQRIGMMKRE--CCDDNFHLVGTGSNEPLLVRSPGC--A 206

  Fly   337 LCGDVE-FNVVSLTGEKIGKISKQWSGLAREIFTDADFFGINFPLDLDVRMKAVLLGATFLIDAM 400
            .||..: |.|::..|.|||:|.:.:.|..:|.:||||.:.::||.||...:|.:|:.:|||||..
 Worm   207 CCGGTQVFPVMTYNGAKIGEIVRLYPGFMQEWYTDADTYIVHFPPDLPPILKILLISSTFLIDYT 271

  Fly   401 FFE-KAGNQ 408
            ||| :.|||
 Worm   272 FFENRGGNQ 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887
Scramblase 184..404 CDD:252175 68/233 (29%)
scrm-6NP_492890.2 LOR 65..275 CDD:295149 63/219 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165970
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0621
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28609
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X164
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.760

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