DRSC/TRiP Functional Genomics Resources

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Protein Alignment scramb1 and scrm-3

DIOPT Version :9

Sequence 1:NP_648389.3 Gene:scramb1 / 326186 FlyBaseID:FBgn0052056 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_503934.2 Gene:scrm-3 / 182212 WormBaseID:WBGene00015437 Length:251 Species:Caenorhabditis elegans


Alignment Length:282 Identity:95/282 - (33%)
Similarity:135/282 - (47%) Gaps:46/282 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 PAGPGGPPNAFGGYPPGQPQQPIVTQPGMGPGMGPG------MAPQGGPAGDWMSIPTGIPNCPR 195
            |..|..||:    |...| .|.|.||||....|.||      :.|              :...|.
 Worm     4 PLMPPAPPS----YVASQ-SQAITTQPGASIPMPPGTIVIEALPP--------------VEGIPG 49

  Fly   196 GLEYLTTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRNCCGPARPFDM 260
            |||||..:|.::|.|.:|.:|..||:||.||:.||....||            |.|||..|.|.|
 Worm    50 GLEYLAYLDTIMVHQFLEPIEIRTGWETKNKYAIKKICYQK------------RQCCGAERAFVM 102

  Fly   261 RVFDNFQQEVIHMHRPLACSSCLFPCC----LQSIEVSAPPGNVIGTIEQEWSICSPSFRILNHV 321
            .:.|||.:||:.:.|...|..|   ||    .....:.:|...::||:.......:....:|:..
 Worm   103 HIVDNFNKEVLTVKRERHCCGC---CCWLGSTNKSTIESPSMGLLGTVLLGHGCTNSHCNVLDKD 164

  Fly   322 GDTVMRIEGP-FCTFSLCGDVEFNVVSL-TGEKIGKISKQWSGLAREIFTDADFFGINFPLDLDV 384
            .:.:..::|. .||:..|.|..|.:.:. |.::||.|:|:|.|:.||.:||||.|.:.||.||||
 Worm   165 EELLFLVDGQGCCTYCCCDDKAFTIKTPDTYKRIGAITKKWGGIIREAYTDADTFAVTFPADLDV 229

  Fly   385 RMKAVLLGATFLIDAMFFEKAG 406
            :.||:||..||:||...||.:|
 Worm   230 KAKALLLATTFVIDFAEFESSG 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scramb1NP_648389.3 Sox_C_TAD <61..>129 CDD:288887
Scramblase 184..404 CDD:252175 77/225 (34%)
scrm-3NP_503934.2 LOR 41..249 CDD:295149 78/236 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 193 1.000 Domainoid score I1864
eggNOG 1 0.900 - - E1_KOG0621
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41418
Inparanoid 1 1.050 208 1.000 Inparanoid score I2390
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28609
OrthoDB 1 1.010 - - D1015148at2759
OrthoFinder 1 1.000 - - FOG0000205
OrthoInspector 1 1.000 - - mtm4812
orthoMCL 1 0.900 - - OOG6_100156
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X164
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.740

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